RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 PTGFRP43088 359 aa10.36□□□□□ -0.75
CLSTN3-208ENST00000538933 CLDN12P56749 244 aa10.36□□□□□ -0.75
CLSTN3-208ENST00000538933 PDZK1IP1Q13113 114 aa10.36□□□□□ -0.75
CLSTN3-208ENST00000538933 MAB21L1Q13394 359 aa10.36□□□□□ -0.75
CLSTN3-208ENST00000538933 GPR176Q14439 515 aa10.36□□□□□ -0.75
CLSTN3-208ENST00000538933 TAF9Q16594 264 aa10.36□□□□□ -0.75
CLSTN3-208ENST00000538933 C1orf100Q5SVJ3 147 aa10.36□□□□□ -0.75
CLSTN3-208ENST00000538933 GLIPR1L1Q6UWM5 242 aa10.36□□□□□ -0.75
CLSTN3-208ENST00000538933 CALHM1Q8IU99 346 aa10.36□□□□□ -0.75
CLSTN3-208ENST00000538933 BOLLQ8N9W6 283 aaKnown RBP10.36□□□□□ -0.75
CLSTN3-208ENST00000538933 DYNC2LI1Q8TCX1 351 aa10.36□□□□□ -0.75
CLSTN3-208ENST00000538933 RAB1CQ92928 201 aa10.36□□□□□ -0.75
CLSTN3-208ENST00000538933 ERGIC1Q969X5 290 aa10.36□□□□□ -0.75
CLSTN3-208ENST00000538933 SLAMF9Q96A28 289 aa10.36□□□□□ -0.75
CLSTN3-208ENST00000538933 GFI1Q99684 422 aa10.36□□□□□ -0.75
CLSTN3-208ENST00000538933 MRI1Q9BV20 369 aa10.36□□□□□ -0.75
CLSTN3-208ENST00000538933 PKIBQ9C010 78 aa10.36□□□□□ -0.75
CLSTN3-208ENST00000538933 CST11Q9H112 138 aa10.36□□□□□ -0.75
CLSTN3-208ENST00000538933 OR51I2Q9H344 312 aa10.36□□□□□ -0.75
CLSTN3-208ENST00000538933 LIN7BQ9HAP6 207 aa10.36□□□□□ -0.75
CLSTN3-208ENST00000538933 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.36□□□□□ -0.75
CLSTN3-208ENST00000538933 PPP1R3CQ9UQK1 317 aa10.36□□□□□ -0.75
CLSTN3-208ENST00000538933 INSIG2Q9Y5U4 225 aa10.36□□□□□ -0.75
CLSTN3-208ENST00000538933 MDFIC2A0A1B0GVS7 189 aa10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 A0A1B0GWJ7 208 aa10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 HOXA3O43365 443 aaPredicted RBP10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 ANGPTL7O43827 346 aa10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 ZNF780AO75290 641 aaPredicted RBP10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 FOXH1O75593 365 aa10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 KDM4BO94953 1096 aa10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 HTR3BO95264 441 aa10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 BPNT1O95861 308 aa10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 IGHV4-38-2P0DP08 117 aa10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 SERPINA2P20848 420 aa10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 GMFBP60983 142 aa10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 IL24Q13007 206 aa10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 MPPED2Q15777 294 aa10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 HFEQ30201 348 aa10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 CNPY1Q3B7I2 92 aa10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 SLC22A6Q4U2R8 563 aa10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 FIP1L1Q6UN15 594 aaKnown RBP10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 WDR86Q86TI4 376 aa10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 C1orf87Q8N0U7 546 aa10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 ZSCAN4Q8NAM6 433 aaPredicted RBP10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 OR4D6Q8NGJ1 314 aa10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 MCFD2Q8NI22 146 aa10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 LRRC29Q8WV35 223 aa10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 ACOT12Q8WYK0 555 aa10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 KCTD12Q96CX2 325 aaKnown RBP10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 GAL3ST1Q99999 423 aa10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 C6orf62Q9GZU0 229 aaPredicted RBP10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 FGF23Q9GZV9 251 aaPredicted RBP10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 MS4A7Q9GZW8 240 aaPredicted RBP10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 ABRACLQ9P1F3 81 aa10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 GHRLQ9UBU3 117 aa10.35□□□□□ -0.75
CLSTN3-208ENST00000538933 IFNL4K9M1U5 179 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 RGS5O15539 181 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 SYNGR1O43759 233 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 CRTAPO75718 401 aaPredicted RBP10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 CLPXO76031 633 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 NXPH2O95156 264 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 CALCBP10092 127 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 GLRA1P23415 457 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 GATA4P43694 442 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 ZP1P60852 638 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 PAX8Q06710 450 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 ZNF826PQ6ZT77 177 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 RNF144BQ7Z419 303 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 NR2C2APQ86WQ0 139 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 Q8IYB0 196 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 SAXO1Q8IYX7 474 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 BATF2Q8N1L9 274 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 PXT1Q8NFP0 134 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 OR51D1Q8NGF3 324 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 FAM110DQ8TAY7 271 aaPredicted RBP10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 TBC1D15Q8TC07 691 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 LGALS14Q8TCE9 139 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 AQP3Q92482 292 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 CCL17Q92583 94 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 EMG1Q92979 244 aaKnown RBP10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 PHF21AQ96BD5 680 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 FAM3DQ96BQ1 224 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 TIMD4Q96H15 378 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 CEP19Q96LK0 163 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 RNF7Q9UBF6 113 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 COMMD3Q9UBI1 195 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 DNAJB11Q9UBS4 358 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 RYR2Q92736 4967 aa10.34□□□□□ -0.75
CLSTN3-208ENST00000538933 A0A0B4J203 849 aa10.33□□□□□ -0.76
CLSTN3-208ENST00000538933 AKR7A2O43488 359 aa10.33□□□□□ -0.76
CLSTN3-208ENST00000538933 RHBDL1O75783 438 aa10.33□□□□□ -0.76
CLSTN3-208ENST00000538933 MPIG6BO95866 241 aa10.33□□□□□ -0.76
CLSTN3-208ENST00000538933 SNRPBP14678 240 aaKnown RBP10.33□□□□□ -0.76
CLSTN3-208ENST00000538933 BCL3P20749 454 aa10.33□□□□□ -0.76
CLSTN3-208ENST00000538933 MPZP25189 248 aa10.33□□□□□ -0.76
CLSTN3-208ENST00000538933 CD80P33681 288 aa10.33□□□□□ -0.76
CLSTN3-208ENST00000538933 S100A5P33763 92 aa10.33□□□□□ -0.76
CLSTN3-208ENST00000538933 BMXP51813 675 aa10.33□□□□□ -0.76
CLSTN3-208ENST00000538933 SNU13P55769 128 aaKnown RBP10.33□□□□□ -0.76
CLSTN3-208ENST00000538933 PROK1P58294 105 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms