RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 HLA-DMAP28067 261 aa13.53□□□□□ -0.24
NUP54-214ENST00000514307 SNU13P55769 128 aaKnown RBP13.53□□□□□ -0.24
NUP54-214ENST00000514307 RAG2P55895 527 aa13.53□□□□□ -0.24
NUP54-214ENST00000514307 BTG1P62324 171 aa13.53□□□□□ -0.24
NUP54-214ENST00000514307 DAZAP2Q15038 168 aaPredicted RBP13.53□□□□□ -0.24
NUP54-214ENST00000514307 SRSF7Q16629 238 aaKnown RBP eCLIP13.53□□□□□ -0.24
NUP54-214ENST00000514307 BTN2A1Q7KYR7 527 aa13.53□□□□□ -0.24
NUP54-214ENST00000514307 DMRTC2Q8IXT2 367 aaPredicted RBP13.53□□□□□ -0.24
NUP54-214ENST00000514307 LRRC29Q8WV35 223 aa13.53□□□□□ -0.24
NUP54-214ENST00000514307 ITLN1Q8WWA0 313 aa13.53□□□□□ -0.24
NUP54-214ENST00000514307 PRRT1Q99946 306 aa13.53□□□□□ -0.24
NUP54-214ENST00000514307 SULT4A1Q9BR01 284 aa13.53□□□□□ -0.24
NUP54-214ENST00000514307 MARVELD1Q9BSK0 173 aa13.53□□□□□ -0.24
NUP54-214ENST00000514307 CHMP1AQ9HD42 196 aaPredicted RBP13.53□□□□□ -0.24
NUP54-214ENST00000514307 NPDC1Q9NQX5 325 aaPredicted RBP13.53□□□□□ -0.24
NUP54-214ENST00000514307 RCC2Q9P258 522 aaKnown RBP13.53□□□□□ -0.24
NUP54-214ENST00000514307 RNF7Q9UBF6 113 aa13.53□□□□□ -0.24
NUP54-214ENST00000514307 AK3Q9UIJ7 227 aa13.53□□□□□ -0.24
NUP54-214ENST00000514307 ANAPC10Q9UM13 185 aa13.53□□□□□ -0.24
NUP54-214ENST00000514307 MYO7BQ6PIF6 2116 aa13.52□□□□□ -0.24
NUP54-214ENST00000514307 CFAP46Q8IYW2 2715 aa13.52□□□□□ -0.24
NUP54-214ENST00000514307 IGHV3-64DA0A0J9YX35 117 aa13.52□□□□□ -0.25
NUP54-214ENST00000514307 DEFB108AA8MXU0 73 aa13.52□□□□□ -0.25
NUP54-214ENST00000514307 INMT-MINDY4F8WBC2 141 aa13.52□□□□□ -0.25
NUP54-214ENST00000514307 HS3ST1O14792 307 aa13.52□□□□□ -0.25
NUP54-214ENST00000514307 GOSR1O95249 250 aa13.52□□□□□ -0.25
NUP54-214ENST00000514307 DUSP1P28562 367 aa13.52□□□□□ -0.25
NUP54-214ENST00000514307 MDH2P40926 338 aaKnown RBP13.52□□□□□ -0.25
NUP54-214ENST00000514307 ZMYND11Q15326 602 aa13.52□□□□□ -0.25
NUP54-214ENST00000514307 GRK1Q15835 563 aa13.52□□□□□ -0.25
NUP54-214ENST00000514307 CHRFAM7AQ494W8 412 aa13.52□□□□□ -0.25
NUP54-214ENST00000514307 ACP7Q6ZNF0 438 aa13.52□□□□□ -0.25
NUP54-214ENST00000514307 ZNF826PQ6ZT77 177 aa13.52□□□□□ -0.25
NUP54-214ENST00000514307 MOGAT3Q86VF5 341 aa13.52□□□□□ -0.25
NUP54-214ENST00000514307 BATF2Q8N1L9 274 aa13.52□□□□□ -0.25
NUP54-214ENST00000514307 SUMF2Q8NBJ7 301 aa13.52□□□□□ -0.25
NUP54-214ENST00000514307 BEST4Q8NFU0 473 aa13.52□□□□□ -0.25
NUP54-214ENST00000514307 OR5H2Q8NGV7 314 aa13.52□□□□□ -0.25
NUP54-214ENST00000514307 SLC25A21Q9BQT8 299 aaPredicted RBP13.52□□□□□ -0.25
NUP54-214ENST00000514307 C12orf4Q9NQ89 552 aa13.52□□□□□ -0.25
NUP54-214ENST00000514307 TREM2Q9NZC2 230 aa13.52□□□□□ -0.25
NUP54-214ENST00000514307 PPP1R3CQ9UQK1 317 aa13.52□□□□□ -0.25
NUP54-214ENST00000514307 NPTNQ9Y639 398 aa13.52□□□□□ -0.25
NUP54-214ENST00000514307 ZNF462Q96JM2 2506 aa13.52□□□□□ -0.25
NUP54-214ENST00000514307 BSNQ9UPA5 3926 aa13.51□□□□□ -0.25
NUP54-214ENST00000514307 hCG_2014768A0A024R1R8 64 aa13.51□□□□□ -0.25
NUP54-214ENST00000514307 H2AFB2P0C5Z0 115 aa13.51□□□□□ -0.25
NUP54-214ENST00000514307 LMO1P25800 156 aa13.51□□□□□ -0.25
NUP54-214ENST00000514307 SNRPD2P62316 118 aaKnown RBP13.51□□□□□ -0.25
NUP54-214ENST00000514307 PDCD1Q15116 288 aa13.51□□□□□ -0.25
NUP54-214ENST00000514307 Q6P435 159 aa13.51□□□□□ -0.25
NUP54-214ENST00000514307 BRICD5Q6PL45 260 aa13.51□□□□□ -0.25
NUP54-214ENST00000514307 MUC15Q8N387 334 aa13.51□□□□□ -0.25
NUP54-214ENST00000514307 BPIFB2Q8N4F0 458 aa13.51□□□□□ -0.25
NUP54-214ENST00000514307 GVQW1Q8N7I0 195 aa13.51□□□□□ -0.25
NUP54-214ENST00000514307 OR4C16Q8NGL9 310 aa13.51□□□□□ -0.25
NUP54-214ENST00000514307 OR56B4Q8NH76 319 aa13.51□□□□□ -0.25
NUP54-214ENST00000514307 PPP1R35Q8TAP8 253 aa13.51□□□□□ -0.25
NUP54-214ENST00000514307 Q8TCH9 128 aa13.51□□□□□ -0.25
NUP54-214ENST00000514307 SCGB3A2Q96PL1 93 aa13.51□□□□□ -0.25
NUP54-214ENST00000514307 HS3ST6Q96QI5 342 aa13.51□□□□□ -0.25
NUP54-214ENST00000514307 DPCDQ9BVM2 203 aaPredicted RBP13.51□□□□□ -0.25
NUP54-214ENST00000514307 MMP28Q9H239 520 aa13.51□□□□□ -0.25
NUP54-214ENST00000514307 GCM1Q9NP62 436 aa13.51□□□□□ -0.25
NUP54-214ENST00000514307 ETAA1Q9NY74 926 aa13.51□□□□□ -0.25
NUP54-214ENST00000514307 DNAJB11Q9UBS4 358 aa13.51□□□□□ -0.25
NUP54-214ENST00000514307 MGAT4AQ9UM21 535 aa13.51□□□□□ -0.25
NUP54-214ENST00000514307 SRRM5B3KS81 715 aa13.5□□□□□ -0.25
NUP54-214ENST00000514307 PFDN1O60925 122 aa13.5□□□□□ -0.25
NUP54-214ENST00000514307 HAND1O96004 215 aa13.5□□□□□ -0.25
NUP54-214ENST00000514307 LHBP01229 141 aa13.5□□□□□ -0.25
NUP54-214ENST00000514307 AMY2AP04746 511 aa13.5□□□□□ -0.25
NUP54-214ENST00000514307 PRDX2P32119 198 aa13.5□□□□□ -0.25
NUP54-214ENST00000514307 KCNJ3P48549 501 aa13.5□□□□□ -0.25
NUP54-214ENST00000514307 ARPC4P59998 168 aa13.5□□□□□ -0.25
NUP54-214ENST00000514307 TSPAN5P62079 268 aa13.5□□□□□ -0.25
NUP54-214ENST00000514307 PAN3Q58A45 887 aaKnown RBP13.5□□□□□ -0.25
NUP54-214ENST00000514307 VAX1Q5SQQ9 334 aa13.5□□□□□ -0.25
NUP54-214ENST00000514307 AGAP6Q5VW22 663 aa13.5□□□□□ -0.25
NUP54-214ENST00000514307 SHEQ5VZ18 495 aa13.5□□□□□ -0.25
NUP54-214ENST00000514307 C1orf87Q8N0U7 546 aa13.5□□□□□ -0.25
NUP54-214ENST00000514307 ARRDC1Q8N5I2 433 aa13.5□□□□□ -0.25
NUP54-214ENST00000514307 OR4S1Q8NGB4 309 aa13.5□□□□□ -0.25
NUP54-214ENST00000514307 OR5AP2Q8NGF4 316 aa13.5□□□□□ -0.25
NUP54-214ENST00000514307 ZNF286AQ9HBT8 521 aa13.5□□□□□ -0.25
NUP54-214ENST00000514307 ZNF701Q9NV72 531 aaPredicted RBP13.5□□□□□ -0.25
NUP54-214ENST00000514307 WIPI2Q9Y4P8 454 aa13.5□□□□□ -0.25
NUP54-214ENST00000514307 BAHCC1Q9P281 2608 aa13.5□□□□□ -0.25
NUP54-214ENST00000514307 TRAV24A0A0B4J272 114 aa13.49□□□□□ -0.25
NUP54-214ENST00000514307 NDUFB6O95139 128 aa13.49□□□□□ -0.25
NUP54-214ENST00000514307 OR2H2O95918 312 aa13.49□□□□□ -0.25
NUP54-214ENST00000514307 PLAUP00749 431 aa13.49□□□□□ -0.25
NUP54-214ENST00000514307 PMP2P02689 132 aa13.49□□□□□ -0.25
NUP54-214ENST00000514307 FCER2P06734 321 aa13.49□□□□□ -0.25
NUP54-214ENST00000514307 CTXN2P0C2S0 81 aa13.49□□□□□ -0.25
NUP54-214ENST00000514307 BTCP35070 178 aa13.49□□□□□ -0.25
NUP54-214ENST00000514307 BCAP31P51572 246 aa13.49□□□□□ -0.25
NUP54-214ENST00000514307 CCR6P51684 374 aa13.49□□□□□ -0.25
NUP54-214ENST00000514307 GMFBP60983 142 aa13.49□□□□□ -0.25
NUP54-214ENST00000514307 RBMS2Q15434 407 aaKnown RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms