RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 TMEM219Q86XT9 240 aa10.86□□□□□ -0.67
CHD3-209ENST00000473376 OR10H4Q8NGA5 316 aa10.86□□□□□ -0.67
CHD3-209ENST00000473376 OR2G2Q8NGZ5 317 aa10.86□□□□□ -0.67
CHD3-209ENST00000473376 NDNFQ8TB73 568 aa10.86□□□□□ -0.67
CHD3-209ENST00000473376 RNF166Q96A37 237 aaPredicted RBP10.86□□□□□ -0.67
CHD3-209ENST00000473376 EME1Q96AY2 570 aa10.86□□□□□ -0.67
CHD3-209ENST00000473376 CENPNQ96H22 339 aaPredicted RBP10.86□□□□□ -0.67
CHD3-209ENST00000473376 CIB1Q99828 191 aa10.86□□□□□ -0.67
CHD3-209ENST00000473376 NOTCH3Q9UM47 2321 aa10.86□□□□□ -0.67
CHD3-209ENST00000473376 SNTNA6NMZ2 147 aa10.85□□□□□ -0.67
CHD3-209ENST00000473376 J3QRE1 110 aa10.85□□□□□ -0.67
CHD3-209ENST00000473376 KDM4BO94953 1096 aa10.85□□□□□ -0.67
CHD3-209ENST00000473376 OR2F2O95006 317 aa10.85□□□□□ -0.67
CHD3-209ENST00000473376 IGHA1P01876 353 aa10.85□□□□□ -0.67
CHD3-209ENST00000473376 OR3A1P47881 315 aa10.85□□□□□ -0.67
CHD3-209ENST00000473376 PAX5Q02548 391 aa10.85□□□□□ -0.67
CHD3-209ENST00000473376 EDDM3AQ14507 147 aa10.85□□□□□ -0.67
CHD3-209ENST00000473376 NSUN5P1Q3KNT7 163 aa10.85□□□□□ -0.67
CHD3-209ENST00000473376 OXLD1Q5BKU9 147 aa10.85□□□□□ -0.67
CHD3-209ENST00000473376 MEDAGQ5VYS4 303 aa10.85□□□□□ -0.67
CHD3-209ENST00000473376 ABHD12Q8N2K0 398 aa10.85□□□□□ -0.67
CHD3-209ENST00000473376 OR5AU1Q8NGC0 362 aa10.85□□□□□ -0.67
CHD3-209ENST00000473376 MRPL48Q96GC5 212 aaKnown RBP10.85□□□□□ -0.67
CHD3-209ENST00000473376 OPALINQ96PE5 141 aa10.85□□□□□ -0.67
CHD3-209ENST00000473376 EXOSC4Q9NPD3 245 aaKnown RBP10.85□□□□□ -0.67
CHD3-209ENST00000473376 PCDHB16Q9NRJ7 776 aa10.85□□□□□ -0.67
CHD3-209ENST00000473376 RBFOX1Q9NWB1 397 aaKnown RBP10.85□□□□□ -0.67
CHD3-209ENST00000473376 HILPDAQ9Y5L2 63 aa10.85□□□□□ -0.67
CHD3-209ENST00000473376 DSCAML1Q8TD84 2053 aa10.85□□□□□ -0.67
CHD3-209ENST00000473376 M0R129 80 aa10.84□□□□□ -0.67
CHD3-209ENST00000473376 SLC16A6O15403 523 aa10.84□□□□□ -0.67
CHD3-209ENST00000473376 KIR3DL2P43630 455 aa10.84□□□□□ -0.67
CHD3-209ENST00000473376 NPBWR2P48146 333 aa10.84□□□□□ -0.67
CHD3-209ENST00000473376 PRRX1P54821 245 aa10.84□□□□□ -0.67
CHD3-209ENST00000473376 SNRPGP62308 76 aaKnown RBP10.84□□□□□ -0.67
CHD3-209ENST00000473376 ZNF85Q03923 595 aa10.84□□□□□ -0.67
CHD3-209ENST00000473376 MRPL28Q13084 256 aaKnown RBP10.84□□□□□ -0.67
CHD3-209ENST00000473376 ODF4Q2M2E3 257 aa10.84□□□□□ -0.67
CHD3-209ENST00000473376 ARSJQ5FYB0 599 aaPredicted RBP10.84□□□□□ -0.67
CHD3-209ENST00000473376 THNSL2Q86YJ6 484 aa10.84□□□□□ -0.67
CHD3-209ENST00000473376 HAVCR2Q8TDQ0 301 aa10.84□□□□□ -0.67
CHD3-209ENST00000473376 CAPSLQ8WWF8 208 aa10.84□□□□□ -0.67
CHD3-209ENST00000473376 SGCDQ92629 289 aa10.84□□□□□ -0.67
CHD3-209ENST00000473376 PHF21AQ96BD5 680 aa10.84□□□□□ -0.67
CHD3-209ENST00000473376 ADAT3Q96EY9 351 aaPredicted RBP10.84□□□□□ -0.67
CHD3-209ENST00000473376 HRASLS5Q96KN8 279 aa10.84□□□□□ -0.67
CHD3-209ENST00000473376 RBM14Q96PK6 669 aaKnown RBP10.84□□□□□ -0.67
CHD3-209ENST00000473376 TBX5Q99593 518 aa10.84□□□□□ -0.67
CHD3-209ENST00000473376 LINC00574Q9H8X3 128 aa10.84□□□□□ -0.67
CHD3-209ENST00000473376 FRRS1LQ9P0K9 344 aa10.84□□□□□ -0.67
CHD3-209ENST00000473376 GNG8Q9UK08 70 aa10.84□□□□□ -0.67
CHD3-209ENST00000473376 HHLA2Q9UM44 414 aa10.84□□□□□ -0.67
CHD3-209ENST00000473376 TSSC4Q9Y5U2 329 aaPredicted RBP10.84□□□□□ -0.67
CHD3-209ENST00000473376 ZNF729A6NN14 1252 aaPredicted RBP10.83□□□□□ -0.68
CHD3-209ENST00000473376 OR2H2O95918 312 aa10.83□□□□□ -0.68
CHD3-209ENST00000473376 DBTP11182 482 aaKnown RBP10.83□□□□□ -0.68
CHD3-209ENST00000473376 ZNF20P17024 532 aa10.83□□□□□ -0.68
CHD3-209ENST00000473376 PRKACAP17612 351 aa10.83□□□□□ -0.68
CHD3-209ENST00000473376 BCL3P20749 454 aa10.83□□□□□ -0.68
CHD3-209ENST00000473376 SLC6A1P30531 599 aa10.83□□□□□ -0.68
CHD3-209ENST00000473376 PLA1AQ53H76 456 aa10.83□□□□□ -0.68
CHD3-209ENST00000473376 SLC16A12Q6ZSM3 486 aa10.83□□□□□ -0.68
CHD3-209ENST00000473376 TRAPPC6BQ86SZ2 158 aa10.83□□□□□ -0.68
CHD3-209ENST00000473376 BATF2Q8N1L9 274 aa10.83□□□□□ -0.68
CHD3-209ENST00000473376 ZNF565Q8N9K5 539 aa10.83□□□□□ -0.68
CHD3-209ENST00000473376 OR4X2Q8NGF9 303 aa10.83□□□□□ -0.68
CHD3-209ENST00000473376 OR4D6Q8NGJ1 314 aa10.83□□□□□ -0.68
CHD3-209ENST00000473376 MRAPQ8TCY5 172 aa10.83□□□□□ -0.68
CHD3-209ENST00000473376 STMN2Q93045 179 aa10.83□□□□□ -0.68
CHD3-209ENST00000473376 FGGYQ96C11 551 aa10.83□□□□□ -0.68
CHD3-209ENST00000473376 CPNE2Q96FN4 548 aaPredicted RBP10.83□□□□□ -0.68
CHD3-209ENST00000473376 RCC1LQ96I51 464 aaKnown RBP10.83□□□□□ -0.68
CHD3-209ENST00000473376 GPR61Q9BZJ8 451 aa10.83□□□□□ -0.68
CHD3-209ENST00000473376 CHST6Q9GZX3 395 aa10.83□□□□□ -0.68
CHD3-209ENST00000473376 OR6C3Q9NZP0 311 aa10.83□□□□□ -0.68
CHD3-209ENST00000473376 ODAMA1E959 279 aa10.82□□□□□ -0.68
CHD3-209ENST00000473376 E9PQ18 207 aa10.82□□□□□ -0.68
CHD3-209ENST00000473376 LY6LH3BQJ8 138 aa10.82□□□□□ -0.68
CHD3-209ENST00000473376 BUB1B-PAK6H3BSN5 160 aa10.82□□□□□ -0.68
CHD3-209ENST00000473376 CLIC3O95833 236 aa10.82□□□□□ -0.68
CHD3-209ENST00000473376 CD33P20138 364 aa10.82□□□□□ -0.68
CHD3-209ENST00000473376 CDK2P24941 298 aa10.82□□□□□ -0.68
CHD3-209ENST00000473376 POLR2IP36954 125 aaKnown RBP10.82□□□□□ -0.68
CHD3-209ENST00000473376 MNDAP41218 407 aa10.82□□□□□ -0.68
CHD3-209ENST00000473376 POU3F4P49335 361 aa10.82□□□□□ -0.68
CHD3-209ENST00000473376 SLC35A2P78381 396 aa10.82□□□□□ -0.68
CHD3-209ENST00000473376 KPNB1Q14974 876 aaKnown RBP10.82□□□□□ -0.68
CHD3-209ENST00000473376 HLA-DRB5Q30154 266 aa10.82□□□□□ -0.68
CHD3-209ENST00000473376 C1orf146Q5VVC0 180 aa10.82□□□□□ -0.68
CHD3-209ENST00000473376 ELP2Q6IA86 826 aa10.82□□□□□ -0.68
CHD3-209ENST00000473376 Q6ZS46 218 aa10.82□□□□□ -0.68
CHD3-209ENST00000473376 CENPVQ7Z7K6 275 aaPredicted RBP10.82□□□□□ -0.68
CHD3-209ENST00000473376 AMIGO2Q86SJ2 522 aa10.82□□□□□ -0.68
CHD3-209ENST00000473376 RDH10Q8IZV5 341 aa10.82□□□□□ -0.68
CHD3-209ENST00000473376 ACBD7Q8N6N7 88 aa10.82□□□□□ -0.68
CHD3-209ENST00000473376 TPRX1Q8N7U7 411 aa10.82□□□□□ -0.68
CHD3-209ENST00000473376 RIBC2Q9H4K1 309 aa10.82□□□□□ -0.68
CHD3-209ENST00000473376 AURKAIP1Q9NWT8 199 aaPredicted RBP10.82□□□□□ -0.68
CHD3-209ENST00000473376 IMPAD1Q9NX62 359 aa10.82□□□□□ -0.68
CHD3-209ENST00000473376 FAM53CQ9NYF3 392 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms