RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 GRINAQ7Z429 371 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 ERASQ7Z444 233 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 FAM9CQ8IZT9 166 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 PRSS35Q8N3Z0 413 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 MINDY2Q8NBR6 621 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 OR2K2Q8NGT1 345 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 MIPOL1Q8TD10 442 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 AENQ8WTP8 325 aaKnown RBP3.42□□□□□ -1.86
HMGB1-207ENST00000468384 FCGR1BQ92637 280 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 RPL36ALQ969Q0 106 aaKnown RBP3.42□□□□□ -1.86
HMGB1-207ENST00000468384 C10orf35Q96D05 121 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 TMEM231Q9H6L2 316 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 ADGRL4Q9HBW9 690 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 MRPS7Q9Y2R9 242 aaKnown RBP3.42□□□□□ -1.86
HMGB1-207ENST00000468384 MUC17Q685J3 4493 aa3.42□□□□□ -1.86
HMGB1-207ENST00000468384 KIR2DL5BA0A0G2JN68 375 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 KIR2DL5BA0A0G2JPC4 375 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 TRBV5-5A0A0J9YX44 114 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 SPOPO43791 374 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 RENP00797 406 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 NPPAP01160 153 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 S100A9P06702 114 aaKnown RBP3.41□□□□□ -1.86
HMGB1-207ENST00000468384 ZNF823P16415 610 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 ZNF43P17038 809 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 CD34P28906 385 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 OR3A3P47888 321 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 TGM4P49221 684 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 HADHBP55084 474 aaKnown RBP3.41□□□□□ -1.86
HMGB1-207ENST00000468384 HERV-K104P63124 156 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 TAF13Q15543 124 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 TMEM41BQ5BJD5 291 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 CDKL4Q5MAI5 379 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 CCNJQ5T5M9 372 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 MINOS1Q5TGZ0 78 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 PRAMEF6Q5VXH4 476 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 TEX36Q5VZQ5 186 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 SLC16A13Q7RTY0 426 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 COX8CQ7Z4L0 72 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 DPPA2Q7Z7J5 298 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 CENPLQ8N0S6 344 aaPredicted RBP3.41□□□□□ -1.86
HMGB1-207ENST00000468384 KIR2DL5AQ8N109 375 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 OR2L13Q8N349 312 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 MMGT1Q8N4V1 131 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 C5orf56Q8N8D9 126 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 BHLHE23Q8NDY6 225 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 FAM71CQ8NEG0 241 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 OR11H2Q8NH07 326 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 OR5K1Q8NHB7 308 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 KIR2DL5BQ8NHK3 375 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 CIDECQ96AQ7 238 aaPredicted RBP3.41□□□□□ -1.86
HMGB1-207ENST00000468384 FLYWCH2Q96CP2 140 aaKnown RBP3.41□□□□□ -1.86
HMGB1-207ENST00000468384 MRPL53Q96EL3 112 aaKnown RBP3.41□□□□□ -1.86
HMGB1-207ENST00000468384 CHRDL1Q9BU40 450 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 MEAF6Q9HAF1 191 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 B3GAT2Q9NPZ5 323 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 ZNF581Q9P0T4 197 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 ZNF443Q9Y2A4 671 aaPredicted RBP3.41□□□□□ -1.86
HMGB1-207ENST00000468384 MRPS28Q9Y2Q9 187 aaKnown RBP3.41□□□□□ -1.86
HMGB1-207ENST00000468384 MINOS1-NBL1R4GNA1 71 aa3.41□□□□□ -1.86
HMGB1-207ENST00000468384 A0A0U1RQV5 110 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 TMEM72A0PK05 275 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 ZNF732B4DXR9 585 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 LY6LH3BQJ8 138 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 ACOT8O14734 319 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 SYT7O43581 403 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 E2F6O75461 281 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 CLN5O75503 358 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 PROSCO94903 275 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 HSPB1P04792 205 aaKnown RBP3.4□□□□□ -1.87
HMGB1-207ENST00000468384 STAG3L3P0CL85 134 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 DNAH10OSP0CZ25 163 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 EFNA1P20827 205 aaPredicted RBP3.4□□□□□ -1.87
HMGB1-207ENST00000468384 CETN2P41208 172 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 MAP3K8P41279 467 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 CDKN1BP46527 198 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 RPS5P46782 204 aaKnown RBP3.4□□□□□ -1.87
HMGB1-207ENST00000468384 GDI2P50395 445 aaKnown RBP3.4□□□□□ -1.87
HMGB1-207ENST00000468384 SSTP61278 116 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 SKP2Q13309 424 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 DYNC1I2Q13409 638 aaKnown RBP3.4□□□□□ -1.87
HMGB1-207ENST00000468384 IL18R1Q13478 541 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 APOFQ13790 326 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 RBM39Q14498 530 aaKnown RBP3.4□□□□□ -1.87
HMGB1-207ENST00000468384 SLC36A2Q495M3 483 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 PABPC1L2AQ5JQF8 200 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 DHRS11Q6UWP2 260 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 TMEM107Q6UX40 140 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 ZCCHC23Q6ZST2 131 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 OR8G5Q8NG78 346 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 OR11H6Q8NGC7 330 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 OR4C15Q8NGM1 316 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 OR9G4Q8NGQ1 327 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 OR9Q1Q8NGQ5 310 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 NDNFQ8TB73 568 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 ANP32BQ92688 251 aaKnown RBP3.4□□□□□ -1.87
HMGB1-207ENST00000468384 C4orf45Q96LM5 186 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 WFDC6Q9BQY6 131 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 SIKE1Q9BRV8 207 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 ULBP2Q9BZM5 246 aa3.4□□□□□ -1.87
HMGB1-207ENST00000468384 ELOVL3Q9HB03 270 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms