RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 TPBGQ13641 420 aa15.34■□□□□ 0.05
SHH-204ENST00000441114 BLMHQ13867 455 aa15.34■□□□□ 0.05
SHH-204ENST00000441114 GRK1Q15835 563 aa15.34■□□□□ 0.05
SHH-204ENST00000441114 TMEM200BQ69YZ2 307 aa15.34■□□□□ 0.05
SHH-204ENST00000441114 UNQ9370/PRO34162Q6UXP9 181 aa15.34■□□□□ 0.05
SHH-204ENST00000441114 C17orf107Q6ZR85 190 aa15.34■□□□□ 0.05
SHH-204ENST00000441114 OR8H2Q8N162 312 aa15.34■□□□□ 0.05
SHH-204ENST00000441114 KIR3DL3Q8N743 410 aa15.34■□□□□ 0.05
SHH-204ENST00000441114 Q8N7P7 452 aa15.34■□□□□ 0.05
SHH-204ENST00000441114 TPRX1Q8N7U7 411 aa15.34■□□□□ 0.05
SHH-204ENST00000441114 SIGLECL1Q8N7X8 197 aa15.34■□□□□ 0.05
SHH-204ENST00000441114 OR4S1Q8NGB4 309 aa15.34■□□□□ 0.05
SHH-204ENST00000441114 OR5D13Q8NGL4 314 aa15.34■□□□□ 0.05
SHH-204ENST00000441114 THRSPQ92748 146 aa15.34■□□□□ 0.05
SHH-204ENST00000441114 MDFIQ99750 246 aa15.34■□□□□ 0.05
SHH-204ENST00000441114 METTL9Q9H1A3 318 aa15.34■□□□□ 0.05
SHH-204ENST00000441114 RHOFQ9HBH0 211 aa15.34■□□□□ 0.05
SHH-204ENST00000441114 ISYNA1Q9NPH2 558 aa15.34■□□□□ 0.05
SHH-204ENST00000441114 ACOT13Q9NPJ3 140 aa15.34■□□□□ 0.05
SHH-204ENST00000441114 MXRA5Q9NR99 2828 aa15.34■□□□□ 0.05
SHH-204ENST00000441114 A0A1W2PRD5 423 aa15.33■□□□□ 0.04
SHH-204ENST00000441114 A0A1W2PRF3 423 aa15.33■□□□□ 0.04
SHH-204ENST00000441114 A0A1W2PRM7 423 aa15.33■□□□□ 0.04
SHH-204ENST00000441114 RNF212BA8MTL3 300 aa15.33■□□□□ 0.04
SHH-204ENST00000441114 DEGS1O15121 323 aa15.33■□□□□ 0.04
SHH-204ENST00000441114 RRP9O43818 475 aaKnown RBP15.33■□□□□ 0.04
SHH-204ENST00000441114 CCL3L1P16619 93 aa15.33■□□□□ 0.04
SHH-204ENST00000441114 CPEP16870 476 aa15.33■□□□□ 0.04
SHH-204ENST00000441114 KLRD1Q13241 179 aa15.33■□□□□ 0.04
SHH-204ENST00000441114 TBCEQ15813 527 aaPredicted RBP15.33■□□□□ 0.04
SHH-204ENST00000441114 RBMS3Q6XE24 437 aaKnown RBP15.33■□□□□ 0.04
SHH-204ENST00000441114 ZNF367Q7RTV3 350 aa15.33■□□□□ 0.04
SHH-204ENST00000441114 MUL1Q969V5 352 aa15.33■□□□□ 0.04
SHH-204ENST00000441114 DMRTB1Q96MA1 342 aa15.33■□□□□ 0.04
SHH-204ENST00000441114 SEBOXQ9HB31 216 aaPredicted RBP15.33■□□□□ 0.04
SHH-204ENST00000441114 TCF7L1Q9HCS4 588 aa15.33■□□□□ 0.04
SHH-204ENST00000441114 ING3Q9NXR8 418 aa15.33■□□□□ 0.04
SHH-204ENST00000441114 MDFIC2A0A1B0GVS7 189 aa15.32■□□□□ 0.04
SHH-204ENST00000441114 M0R1W7 72 aa15.32■□□□□ 0.04
SHH-204ENST00000441114 CSTBP04080 98 aaKnown RBP15.32■□□□□ 0.04
SHH-204ENST00000441114 SERPINA2P20848 420 aa15.32■□□□□ 0.04
SHH-204ENST00000441114 BMXP51813 675 aa15.32■□□□□ 0.04
SHH-204ENST00000441114 EMX1Q04741 257 aaPredicted RBP15.32■□□□□ 0.04
SHH-204ENST00000441114 ZNF273Q14593 569 aa15.32■□□□□ 0.04
SHH-204ENST00000441114 PIGYQ3MUY2 71 aa15.32■□□□□ 0.04
SHH-204ENST00000441114 ELP2Q6IA86 826 aa15.32■□□□□ 0.04
SHH-204ENST00000441114 Q6P435 159 aa15.32■□□□□ 0.04
SHH-204ENST00000441114 SVOPQ8N4V2 548 aa15.32■□□□□ 0.04
SHH-204ENST00000441114 PPP1R35Q8TAP8 253 aa15.32■□□□□ 0.04
SHH-204ENST00000441114 ZNF48Q96MX3 618 aaPredicted RBP15.32■□□□□ 0.04
SHH-204ENST00000441114 YTHDF1Q9BYJ9 559 aaKnown RBP15.32■□□□□ 0.04
SHH-204ENST00000441114 PPA2Q9H2U2 334 aa15.32■□□□□ 0.04
SHH-204ENST00000441114 MRPS28Q9Y2Q9 187 aaKnown RBP15.32■□□□□ 0.04
SHH-204ENST00000441114 DSCAML1Q8TD84 2053 aa15.32■□□□□ 0.04
SHH-204ENST00000441114 IGHV1-69DA0A0B4J2H0 117 aa15.31■□□□□ 0.04
SHH-204ENST00000441114 A0A1W2PPH5 198 aa15.31■□□□□ 0.04
SHH-204ENST00000441114 HSPB6O14558 160 aa15.31■□□□□ 0.04
SHH-204ENST00000441114 IGHV1-69P01742 117 aa15.31■□□□□ 0.04
SHH-204ENST00000441114 OR3A1P47881 315 aa15.31■□□□□ 0.04
SHH-204ENST00000441114 GP2P55259 537 aaKnown RBP15.31■□□□□ 0.04
SHH-204ENST00000441114 ERVFRD-1P60508 538 aa15.31■□□□□ 0.04
SHH-204ENST00000441114 SLC22A6Q4U2R8 563 aa15.31■□□□□ 0.04
SHH-204ENST00000441114 HSD17B12Q53GQ0 312 aa15.31■□□□□ 0.04
SHH-204ENST00000441114 ASCL4Q6XD76 172 aa15.31■□□□□ 0.04
SHH-204ENST00000441114 PHC2Q8IXK0 858 aa15.31■□□□□ 0.04
SHH-204ENST00000441114 TBC1D15Q8TC07 691 aa15.31■□□□□ 0.04
SHH-204ENST00000441114 PPIL3Q9H2H8 161 aaKnown RBP15.31■□□□□ 0.04
SHH-204ENST00000441114 A0A0A6YYJ9 748 aa15.3■□□□□ 0.04
SHH-204ENST00000441114 A0A0G2JK05 382 aa15.3■□□□□ 0.04
SHH-204ENST00000441114 A0A1W2PP11 408 aa15.3■□□□□ 0.04
SHH-204ENST00000441114 RNASEK-C17orf49H0YIS7 233 aa15.3■□□□□ 0.04
SHH-204ENST00000441114 SLC33A1O00400 549 aaPredicted RBP15.3■□□□□ 0.04
SHH-204ENST00000441114 MGST3O14880 152 aa15.3■□□□□ 0.04
SHH-204ENST00000441114 MRPS14O60783 128 aaKnown RBP15.3■□□□□ 0.04
SHH-204ENST00000441114 HILS1P60008 231 aa15.3■□□□□ 0.04
SHH-204ENST00000441114 TRAM1Q15629 374 aa15.3■□□□□ 0.04
SHH-204ENST00000441114 DEFB112Q30KQ8 113 aa15.3■□□□□ 0.04
SHH-204ENST00000441114 KRTAP24-1Q3LI83 254 aa15.3■□□□□ 0.04
SHH-204ENST00000441114 AWAT2Q6E213 333 aa15.3■□□□□ 0.04
SHH-204ENST00000441114 GLIPR1L1Q6UWM5 242 aa15.3■□□□□ 0.04
SHH-204ENST00000441114 TMEM91Q6ZNR0 172 aa15.3■□□□□ 0.04
SHH-204ENST00000441114 SPARTQ8N0X7 666 aa15.3■□□□□ 0.04
SHH-204ENST00000441114 OSR2Q8N2R0 312 aa15.3■□□□□ 0.04
SHH-204ENST00000441114 TMEM158Q8WZ71 300 aa15.3■□□□□ 0.04
SHH-204ENST00000441114 ZDHHC16Q969W1 377 aa15.3■□□□□ 0.04
SHH-204ENST00000441114 DUX5Q96PT3 197 aa15.3■□□□□ 0.04
SHH-204ENST00000441114 JMJD8Q96S16 334 aa15.3■□□□□ 0.04
SHH-204ENST00000441114 METTL8Q9H825 291 aaKnown RBP15.3■□□□□ 0.04
SHH-204ENST00000441114 ST3GAL6Q9Y274 331 aa15.3■□□□□ 0.04
SHH-204ENST00000441114 SF3B6Q9Y3B4 125 aaKnown RBP15.3■□□□□ 0.04
SHH-204ENST00000441114 LRRC42Q9Y546 428 aa15.3■□□□□ 0.04
SHH-204ENST00000441114 MEGF11A6BM72 1044 aa15.29■□□□□ 0.04
SHH-204ENST00000441114 SC5DO75845 299 aa15.29■□□□□ 0.04
SHH-204ENST00000441114 SRMP19623 302 aa15.29■□□□□ 0.04
SHH-204ENST00000441114 LMO1P25800 156 aa15.29■□□□□ 0.04
SHH-204ENST00000441114 BPIFB3P59826 476 aa15.29■□□□□ 0.04
SHH-204ENST00000441114 FABP5Q01469 135 aa15.29■□□□□ 0.04
SHH-204ENST00000441114 AESQ08117 197 aa15.29■□□□□ 0.04
SHH-204ENST00000441114 BAMBIQ13145 260 aa15.29■□□□□ 0.04
SHH-204ENST00000441114 METAP1DQ6UB28 335 aaPredicted RBP15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms