RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 SIGLEC11Q96RL6 698 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 WSB2Q9NYS7 404 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-204ENST00000423058 ERRFI1Q9UJM3 462 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-204ENST00000423058 P01737 135 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 LPAR6P43657 344 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 NAAAQ02083 359 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 COX19Q49B96 90 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 CCSMST1Q4G0I0 132 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 CT55Q8WUE5 264 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 TUBA4BQ9H853 241 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 XIRP1Q702N8 1843 aaKnown RBP6.11□□□□□ -1.43
SCN1A-204ENST00000423058 ATXN7O15265 892 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-204ENST00000423058 ZNF737O75373 536 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 RHBDL1O75783 438 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 HAND1O96004 215 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 MELTFP08582 738 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 LOXL3P58215 753 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 FOXO1Q12778 655 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 TMEM241Q24JQ0 296 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 ANKRD55Q3KP44 614 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 OTOSQ8NHW6 89 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 FLYWCH2Q96CP2 140 aaKnown RBP6.11□□□□□ -1.43
SCN1A-204ENST00000423058 VN1R1Q9GZP7 353 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 PRNDQ9UKY0 176 aa6.11□□□□□ -1.43
SCN1A-204ENST00000423058 MPDU1O75352 247 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 CD1BP29016 333 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 RAC3P60763 192 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 CDK5R1Q15078 307 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 LBHQ53QV2 105 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-204ENST00000423058 FAM209AQ5JX71 171 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 FGF14Q92915 247 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 OR5M11Q96RB7 305 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 GABARAPL3Q9BY60 117 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 LHX9Q9NQ69 397 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 BET1LQ9NYM9 111 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 TRAPPC4Q9Y296 219 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 QSER1Q2KHR3 1735 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 A0A0A6YYJ9 748 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 TRDCB7Z8K6 153 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 H3BVH4 76 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 IGHA1P01876 353 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 IGHA2P01877 340 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 SULT1A1P50225 295 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 MMP15P51511 669 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 SPANXN1Q5VSR9 72 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 HSD17B13Q7Z5P4 300 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-204ENST00000423058 OR13F1Q8NGS4 319 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 ANAPC16Q96DE5 110 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 PRDM14Q9GZV8 571 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 TRIM77I1YAP6 450 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 MFNGO00587 321 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 COX6CP09669 75 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 GALP22466 123 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 BSGP35613 385 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 SIGLEC14Q08ET2 396 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 GUCA2BQ16661 112 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 PAQR9Q6ZVX9 377 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 OR5A2Q8NGI9 324 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 CCL4L1Q8NHW4 92 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 RASL12Q9NYN1 266 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 RNF7Q9UBF6 113 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 SF3B6Q9Y3B4 125 aaKnown RBP6.1□□□□□ -1.43
SCN1A-204ENST00000423058 IGKV3-7A0A075B6H7 116 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 C3orf85A0A1B0GTC6 90 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 UPK1AO00322 258 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 FCN1O00602 326 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 GZMHP20718 246 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 ASAH1Q13510 395 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 SPINK14Q6IE38 97 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 FAHD2BQ6P2I3 314 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-204ENST00000423058 LILRA3Q8N6C8 439 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-204ENST00000423058 FAHD2AQ96GK7 314 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 CCL19Q99731 98 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 CDCA4Q9BXL8 241 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 A0A0A6YYD5 115 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 ISLRO14498 428 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 EPPINO95925 133 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 C1QBP02746 253 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 CEACAM5P06731 702 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 ECSCRQ19T08 205 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 CLEC12BQ2HXU8 276 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 LRP11Q86VZ4 500 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 PPP1R1CQ8WVI7 109 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 C16orf92Q96LL3 132 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 C20orf141Q9NUB4 165 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 ZNF256Q9Y2P7 627 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-204ENST00000423058 TRPM7Q96QT4 1865 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 ZAR1LA6NP61 321 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 LINC01565O15544 149 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 UBE2L3P68036 154 aaKnown RBP6.1□□□□□ -1.43
SCN1A-204ENST00000423058 PABPC1L2AQ5JQF8 200 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 DEGS2Q6QHC5 323 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 Q6ZSR9 355 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 C16orf82Q7Z2V1 217 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 BCDIN3DQ7Z5W3 292 aaKnown RBP6.1□□□□□ -1.43
SCN1A-204ENST00000423058 RPS4Y2Q8TD47 263 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 NUDCD2Q8WVJ2 157 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 SH3BGRL3Q9H299 93 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 NIT2Q9NQR4 276 aa6.1□□□□□ -1.43
SCN1A-204ENST00000423058 DOK5Q9P104 306 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms