RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 DYNLT3P51808 116 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 PDZK1IP1Q13113 114 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 ZNF146Q15072 292 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 ZIK1Q3SY52 487 aaPredicted RBP9.26□□□□□ -0.93
USP4-204ENST00000416417 MINOS1Q5TGZ0 78 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 FOXB2Q5VYV0 432 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 OR4F17Q8NGA8 305 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 OR8J1Q8NGP2 316 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 OR13C9Q8NGT0 318 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 PP6455Q8WZ26 134 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 RNFT2Q96EX2 444 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 OR4F4Q96R69 305 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 ZNF286AQ9HBT8 521 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 NEK6Q9HC98 313 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 HMG20AQ9NP66 347 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 EXOSC4Q9NPD3 245 aaKnown RBP9.26□□□□□ -0.93
USP4-204ENST00000416417 MINOS1-NBL1R4GNA1 71 aa9.26□□□□□ -0.93
USP4-204ENST00000416417 DAPL1A0PJW8 107 aa9.25□□□□□ -0.93
USP4-204ENST00000416417 J3QLW9 94 aa9.25□□□□□ -0.93
USP4-204ENST00000416417 CYB5AP00167 134 aa9.25□□□□□ -0.93
USP4-204ENST00000416417 IGHV3-7P01780 117 aa9.25□□□□□ -0.93
USP4-204ENST00000416417 ZNF44P15621 663 aa9.25□□□□□ -0.93
USP4-204ENST00000416417 ZNF19P17023 458 aa9.25□□□□□ -0.93
USP4-204ENST00000416417 ABCA11PQ4W5N1 156 aa9.25□□□□□ -0.93
USP4-204ENST00000416417 TMEM244Q5VVB8 128 aa9.25□□□□□ -0.93
USP4-204ENST00000416417 CENPVQ7Z7K6 275 aaPredicted RBP9.25□□□□□ -0.93
USP4-204ENST00000416417 Q8IYB0 196 aa9.25□□□□□ -0.93
USP4-204ENST00000416417 ENTHD1Q8IYW4 607 aa9.25□□□□□ -0.93
USP4-204ENST00000416417 DNAAF1Q8NEP3 725 aa9.25□□□□□ -0.93
USP4-204ENST00000416417 OR13C3Q8NGS6 347 aa9.25□□□□□ -0.93
USP4-204ENST00000416417 STMN2Q93045 179 aa9.25□□□□□ -0.93
USP4-204ENST00000416417 COQ2Q96H96 371 aa9.25□□□□□ -0.93
USP4-204ENST00000416417 OPALINQ96PE5 141 aa9.25□□□□□ -0.93
USP4-204ENST00000416417 OSBPL10Q9BXB5 764 aa9.25□□□□□ -0.93
USP4-204ENST00000416417 PPIL3Q9H2H8 161 aaKnown RBP9.25□□□□□ -0.93
USP4-204ENST00000416417 NECAP2Q9NVZ3 263 aa9.25□□□□□ -0.93
USP4-204ENST00000416417 DSCAML1Q8TD84 2053 aa9.24□□□□□ -0.93
USP4-204ENST00000416417 TRGV10A0A0A0MS01 117 aa9.24□□□□□ -0.93
USP4-204ENST00000416417 HSPB6O14558 160 aa9.24□□□□□ -0.93
USP4-204ENST00000416417 SH2D1BO14796 132 aa9.24□□□□□ -0.93
USP4-204ENST00000416417 MPIG6BO95866 241 aa9.24□□□□□ -0.93
USP4-204ENST00000416417 OCM2P0CE71 109 aa9.24□□□□□ -0.93
USP4-204ENST00000416417 OCMP0CE72 109 aaPredicted RBP9.24□□□□□ -0.93
USP4-204ENST00000416417 CD33P20138 364 aa9.24□□□□□ -0.93
USP4-204ENST00000416417 PRKACBP22694 351 aa9.24□□□□□ -0.93
USP4-204ENST00000416417 OR3A4PP47883 348 aa9.24□□□□□ -0.93
USP4-204ENST00000416417 LOXL3P58215 753 aa9.24□□□□□ -0.93
USP4-204ENST00000416417 CDC42P60953 191 aa9.24□□□□□ -0.93
USP4-204ENST00000416417 CD83Q01151 205 aa9.24□□□□□ -0.93
USP4-204ENST00000416417 RBM39Q14498 530 aaKnown RBP9.24□□□□□ -0.93
USP4-204ENST00000416417 ATXN7L3Q14CW9 347 aaPredicted RBP9.24□□□□□ -0.93
USP4-204ENST00000416417 C9orf152Q5JTZ5 239 aa9.24□□□□□ -0.93
USP4-204ENST00000416417 LPCAT4Q643R3 524 aa9.24□□□□□ -0.93
USP4-204ENST00000416417 LHFPL2Q6ZUX7 228 aa9.24□□□□□ -0.93
USP4-204ENST00000416417 DTX3Q8N9I9 347 aa9.24□□□□□ -0.93
USP4-204ENST00000416417 CCDC54Q8NEL0 328 aa9.24□□□□□ -0.93
USP4-204ENST00000416417 PYDC1Q8WXC3 89 aa9.24□□□□□ -0.93
USP4-204ENST00000416417 LEAP2Q969E1 77 aa9.24□□□□□ -0.93
USP4-204ENST00000416417 RFKQ969G6 155 aa9.24□□□□□ -0.93
USP4-204ENST00000416417 CENPNQ96H22 339 aaPredicted RBP9.24□□□□□ -0.93
USP4-204ENST00000416417 SLC25A33Q9BSK2 321 aa9.24□□□□□ -0.93
USP4-204ENST00000416417 IMPAD1Q9NX62 359 aa9.24□□□□□ -0.93
USP4-204ENST00000416417 DPM3Q9P2X0 92 aa9.24□□□□□ -0.93
USP4-204ENST00000416417 ENOPH1Q9UHY7 261 aa9.24□□□□□ -0.93
USP4-204ENST00000416417 GLS2Q9UI32 602 aa9.24□□□□□ -0.93
USP4-204ENST00000416417 UBE2J1Q9Y385 318 aaPredicted RBP9.24□□□□□ -0.93
USP4-204ENST00000416417 DNAH3Q8TD57 4116 aa9.23□□□□□ -0.93
USP4-204ENST00000416417 TCRBV4S1A1TA0A5B7 111 aa9.23□□□□□ -0.93
USP4-204ENST00000416417 J3QRE1 110 aa9.23□□□□□ -0.93
USP4-204ENST00000416417 SLC16A6O15403 523 aa9.23□□□□□ -0.93
USP4-204ENST00000416417 KDM4BO94953 1096 aa9.23□□□□□ -0.93
USP4-204ENST00000416417 ALX3O95076 343 aa9.23□□□□□ -0.93
USP4-204ENST00000416417 AMY1AP04745 511 aa9.23□□□□□ -0.93
USP4-204ENST00000416417 AMY2AP04746 511 aa9.23□□□□□ -0.93
USP4-204ENST00000416417 HTR1AP08908 422 aa9.23□□□□□ -0.93
USP4-204ENST00000416417 PF4V1P10720 104 aa9.23□□□□□ -0.93
USP4-204ENST00000416417 NFYBP25208 207 aa9.23□□□□□ -0.93
USP4-204ENST00000416417 ERP29P30040 261 aaKnown RBP9.23□□□□□ -0.93
USP4-204ENST00000416417 KPNB1Q14974 876 aaKnown RBP9.23□□□□□ -0.93
USP4-204ENST00000416417 LTC4SQ16873 150 aa9.23□□□□□ -0.93
USP4-204ENST00000416417 KHDC1LQ5JSQ8 128 aa9.23□□□□□ -0.93
USP4-204ENST00000416417 SPIN3Q5JUX0 258 aa9.23□□□□□ -0.93
USP4-204ENST00000416417 TPTE2P1Q5T6R2 138 aa9.23□□□□□ -0.93
USP4-204ENST00000416417 Q6P435 159 aa9.23□□□□□ -0.93
USP4-204ENST00000416417 HEPN1Q6WQI6 88 aa9.23□□□□□ -0.93
USP4-204ENST00000416417 UTS2BQ765I0 119 aa9.23□□□□□ -0.93
USP4-204ENST00000416417 LHFPL3Q86UP9 236 aa9.23□□□□□ -0.93
USP4-204ENST00000416417 MYDGFQ969H8 173 aa9.23□□□□□ -0.93
USP4-204ENST00000416417 C10orf35Q96D05 121 aa9.23□□□□□ -0.93
USP4-204ENST00000416417 PELI1Q96FA3 418 aa9.23□□□□□ -0.93
USP4-204ENST00000416417 C4orf36Q96KX1 117 aa9.23□□□□□ -0.93
USP4-204ENST00000416417 NR1H4Q96RI1 486 aaPredicted RBP9.23□□□□□ -0.93
USP4-204ENST00000416417 MBOAT4Q96T53 435 aa9.23□□□□□ -0.93
USP4-204ENST00000416417 GAL3ST2Q9H3Q3 398 aa9.23□□□□□ -0.93
USP4-204ENST00000416417 ISG20L2Q9H9L3 353 aaKnown RBP9.23□□□□□ -0.93
USP4-204ENST00000416417 SEBOXQ9HB31 216 aaPredicted RBP9.23□□□□□ -0.93
USP4-204ENST00000416417 FAM53CQ9NYF3 392 aa9.23□□□□□ -0.93
USP4-204ENST00000416417 TRAV39A0A0B4J263 110 aa9.22□□□□□ -0.93
USP4-204ENST00000416417 ODAMA1E959 279 aa9.22□□□□□ -0.93
USP4-204ENST00000416417 OR4C45A6NMZ5 311 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms