RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 MENTQ9BUN1 341 aa17.29■□□□□ 0.36
CCDC88B-202ENST00000356786 A0A1W2PPC4 97 aa17.29■□□□□ 0.36
CCDC88B-202ENST00000356786 SYNGR2O43760 224 aa17.29■□□□□ 0.36
CCDC88B-202ENST00000356786 MBPP02686 304 aaPredicted RBP17.29■□□□□ 0.36
CCDC88B-202ENST00000356786 EWSR1Q01844 656 aaKnown RBP eCLIP17.29■□□□□ 0.36
CCDC88B-202ENST00000356786 LBHQ53QV2 105 aaPredicted RBP17.29■□□□□ 0.36
CCDC88B-202ENST00000356786 Q5BKY6 102 aa17.29■□□□□ 0.36
CCDC88B-202ENST00000356786 MOB1BQ7L9L4 216 aa17.29■□□□□ 0.36
CCDC88B-202ENST00000356786 OR10X1Q8NGY0 326 aa17.29■□□□□ 0.36
CCDC88B-202ENST00000356786 RFESDQ8TAC1 157 aa17.29■□□□□ 0.36
CCDC88B-202ENST00000356786 ELOVL1Q9BW60 279 aa17.29■□□□□ 0.36
CCDC88B-202ENST00000356786 TMEM30CPA0ZSE6 113 aa17.28■□□□□ 0.36
CCDC88B-202ENST00000356786 CCR5P51681 352 aa17.28■□□□□ 0.36
CCDC88B-202ENST00000356786 C19orf35Q6ZS72 473 aa17.28■□□□□ 0.36
CCDC88B-202ENST00000356786 LRFN3Q9BTN0 628 aa17.28■□□□□ 0.36
CCDC88B-202ENST00000356786 PAM16Q9Y3D7 125 aa17.28■□□□□ 0.36
CCDC88B-202ENST00000356786 CRYM-AS1A6NIL9 109 aa17.28■□□□□ 0.36
CCDC88B-202ENST00000356786 LRP11Q86VZ4 500 aa17.28■□□□□ 0.36
CCDC88B-202ENST00000356786 CKAP5Q14008 2032 aa17.28■□□□□ 0.36
CCDC88B-202ENST00000356786 SPTY2D1-AS1A0A0U1RR47 76 aa17.28■□□□□ 0.36
CCDC88B-202ENST00000356786 NGFP01138 241 aa17.28■□□□□ 0.36
CCDC88B-202ENST00000356786 CAMPP49913 170 aa17.28■□□□□ 0.36
CCDC88B-202ENST00000356786 CD200R1LQ6Q8B3 271 aa17.28■□□□□ 0.36
CCDC88B-202ENST00000356786 OR10V1Q8NGI7 309 aa17.28■□□□□ 0.36
CCDC88B-202ENST00000356786 OR10G8Q8NGN5 311 aa17.28■□□□□ 0.36
CCDC88B-202ENST00000356786 M1APQ8TC57 530 aa17.28■□□□□ 0.36
CCDC88B-202ENST00000356786 SLC2A9Q9NRM0 540 aa17.28■□□□□ 0.36
CCDC88B-202ENST00000356786 ZNF391Q9UJN7 358 aa17.28■□□□□ 0.36
CCDC88B-202ENST00000356786 MEX3AA1L020 520 aaKnown RBP17.28■□□□□ 0.36
CCDC88B-202ENST00000356786 NHLH1Q02575 133 aa17.28■□□□□ 0.36
CCDC88B-202ENST00000356786 NHLH2Q02577 135 aa17.28■□□□□ 0.36
CCDC88B-202ENST00000356786 ISXQ2M1V0 245 aa17.28■□□□□ 0.36
CCDC88B-202ENST00000356786 TBC1D26Q86UD7 250 aa17.28■□□□□ 0.36
CCDC88B-202ENST00000356786 LDLRAD3Q86YD5 345 aa17.28■□□□□ 0.36
CCDC88B-202ENST00000356786 OR2V1Q8NHB1 315 aa17.28■□□□□ 0.36
CCDC88B-202ENST00000356786 DEFB127Q9H1M4 99 aa17.28■□□□□ 0.36
CCDC88B-202ENST00000356786 ASXL3Q9C0F0 2248 aa17.28■□□□□ 0.36
CCDC88B-202ENST00000356786 GCM2O75603 506 aaPredicted RBP17.27■□□□□ 0.36
CCDC88B-202ENST00000356786 RPLP1P05386 114 aaKnown RBP17.27■□□□□ 0.36
CCDC88B-202ENST00000356786 ZNF32P17041 273 aa17.27■□□□□ 0.36
CCDC88B-202ENST00000356786 ATG4DQ86TL0 474 aaPredicted RBP17.27■□□□□ 0.36
CCDC88B-202ENST00000356786 TMEM147Q9BVK8 224 aa17.27■□□□□ 0.36
CCDC88B-202ENST00000356786 MDKP21741 143 aaPredicted RBP17.27■□□□□ 0.36
CCDC88B-202ENST00000356786 VASH2Q86V25 355 aa17.27■□□□□ 0.36
CCDC88B-202ENST00000356786 POM121L2Q96KW2 1035 aa17.27■□□□□ 0.36
CCDC88B-202ENST00000356786 OR51M1Q9H341 326 aa17.27■□□□□ 0.36
CCDC88B-202ENST00000356786 HRASP01112 189 aa17.27■□□□□ 0.35
CCDC88B-202ENST00000356786 NHLRC3Q5JS37 347 aa17.27■□□□□ 0.35
CCDC88B-202ENST00000356786 WDR73Q6P4I2 378 aa17.27■□□□□ 0.35
CCDC88B-202ENST00000356786 NHLRC2Q8NBF2 726 aa17.27■□□□□ 0.35
CCDC88B-202ENST00000356786 ANAPC16Q96DE5 110 aa17.27■□□□□ 0.35
CCDC88B-202ENST00000356786 TEX50A0A1B0GTY4 177 aa17.26■□□□□ 0.35
CCDC88B-202ENST00000356786 A0A1W2PR80 420 aa17.26■□□□□ 0.35
CCDC88B-202ENST00000356786 ATP6V0CP27449 155 aa17.26■□□□□ 0.35
CCDC88B-202ENST00000356786 OR10J1P30954 320 aa17.26■□□□□ 0.35
CCDC88B-202ENST00000356786 SMIM21Q3B7S5 101 aa17.26■□□□□ 0.35
CCDC88B-202ENST00000356786 C16orf47Q6ZP98 133 aaPredicted RBP17.26■□□□□ 0.35
CCDC88B-202ENST00000356786 OR5AU1Q8NGC0 362 aa17.26■□□□□ 0.35
CCDC88B-202ENST00000356786 STARD4Q96DR4 205 aa17.26■□□□□ 0.35
CCDC88B-202ENST00000356786 LGALS4P56470 323 aa17.26■□□□□ 0.35
CCDC88B-202ENST00000356786 SPCS3P61009 180 aa17.26■□□□□ 0.35
CCDC88B-202ENST00000356786 B2MP61769 119 aa17.26■□□□□ 0.35
CCDC88B-202ENST00000356786 GPR27Q9NS67 375 aa17.26■□□□□ 0.35
CCDC88B-202ENST00000356786 ICAM5Q9UMF0 924 aa17.26■□□□□ 0.35
CCDC88B-202ENST00000356786 SLC45A2Q9UMX9 530 aa17.26■□□□□ 0.35
CCDC88B-202ENST00000356786 CACNA1IQ9P0X4 2223 aa17.26■□□□□ 0.35
CCDC88B-202ENST00000356786 C11orf94C9JXX5 98 aa17.26■□□□□ 0.35
CCDC88B-202ENST00000356786 MGAT2Q10469 447 aa17.26■□□□□ 0.35
CCDC88B-202ENST00000356786 CEBPEQ15744 281 aa17.26■□□□□ 0.35
CCDC88B-202ENST00000356786 RPEL1Q2QD12 228 aa17.26■□□□□ 0.35
CCDC88B-202ENST00000356786 SPINK9Q5DT21 86 aa17.26■□□□□ 0.35
CCDC88B-202ENST00000356786 STUMQ69YW2 141 aa17.26■□□□□ 0.35
CCDC88B-202ENST00000356786 GNRHR2Q96P88 292 aa17.26■□□□□ 0.35
CCDC88B-202ENST00000356786 FCGR3BO75015 233 aa17.26■□□□□ 0.35
CCDC88B-202ENST00000356786 SULT1A2P50226 295 aa17.25■□□□□ 0.35
CCDC88B-202ENST00000356786 RHOBP62745 196 aa17.25■□□□□ 0.35
CCDC88B-202ENST00000356786 PNPLA5Q7Z6Z6 429 aaPredicted RBP17.25■□□□□ 0.35
CCDC88B-202ENST00000356786 MS4A3Q96HJ5 214 aa17.25■□□□□ 0.35
CCDC88B-202ENST00000356786 NDFIP1Q9BT67 221 aa17.25■□□□□ 0.35
CCDC88B-202ENST00000356786 TAAR3PQ9P1P4 343 aa17.25■□□□□ 0.35
CCDC88B-202ENST00000356786 CABIN1Q9Y6J0 2220 aa17.25■□□□□ 0.35
CCDC88B-202ENST00000356786 LILRA5A6NI73 299 aa17.25■□□□□ 0.35
CCDC88B-202ENST00000356786 DSCR4P56555 118 aaPredicted RBP17.25■□□□□ 0.35
CCDC88B-202ENST00000356786 RPL11P62913 178 aaKnown RBP17.25■□□□□ 0.35
CCDC88B-202ENST00000356786 ATP6V1FQ16864 119 aa17.25■□□□□ 0.35
CCDC88B-202ENST00000356786 RFLNBQ8N5W9 214 aa17.25■□□□□ 0.35
CCDC88B-202ENST00000356786 HES4Q9HCC6 221 aa17.25■□□□□ 0.35
CCDC88B-202ENST00000356786 TCL1AP56279 114 aa17.25■□□□□ 0.35
CCDC88B-202ENST00000356786 ZNF718Q3SXZ3 478 aa17.25■□□□□ 0.35
CCDC88B-202ENST00000356786 MRGPRGQ86SM5 289 aa17.25■□□□□ 0.35
CCDC88B-202ENST00000356786 SDHCQ99643 169 aaPredicted RBP17.25■□□□□ 0.35
CCDC88B-202ENST00000356786 EGLN1Q9GZT9 426 aa17.25■□□□□ 0.35
CCDC88B-202ENST00000356786 CDS2O95674 445 aa17.25■□□□□ 0.35
CCDC88B-202ENST00000356786 GLB1P16278 677 aa17.25■□□□□ 0.35
CCDC88B-202ENST00000356786 OR10C1Q96KK4 312 aa17.25■□□□□ 0.35
CCDC88B-202ENST00000356786 OR5AL1P0C617 328 aa17.24■□□□□ 0.35
CCDC88B-202ENST00000356786 COX14Q96I36 57 aa17.24■□□□□ 0.35
CCDC88B-202ENST00000356786 VSTM2LQ96N03 204 aa17.24■□□□□ 0.35
CCDC88B-202ENST00000356786 ZNF552Q9H707 407 aaPredicted RBP17.24■□□□□ 0.35
CCDC88B-202ENST00000356786 KLK13Q9UKR3 277 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms