RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 COL4A2P08572 1712 aa11.72□□□□□ -0.53
CCDC88C-201ENST00000331194 SHISA7A6NL88 538 aa11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 SSSCA1O60232 199 aa11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 FOLR1P15328 257 aa11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 COL9A1P20849 921 aa11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 FAM180AQ6UWF9 173 aa11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 NUP54Q7Z3B4 507 aa11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 TMEM208Q9BTX3 173 aa11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 LANCL2Q9NS86 450 aa11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 ANXA10Q9UJ72 324 aa11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 FREM2Q5SZK8 3169 aa11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 PROB1E7EW31 1015 aa11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 IGHMP01871 453 aa11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 DUSP1P28562 367 aa11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 FGF8P55075 233 aaPredicted RBP11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 PLCXD2Q0VAA5 305 aa11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 SLC10A1Q14973 349 aa11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 CXorf66Q5JRM2 361 aaPredicted RBP11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 THEM4Q5T1C6 240 aa11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 ETFRF1Q6IPR1 90 aa11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 DNM1P34Q6PK57 102 aa11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 C9orf40Q8IXQ3 194 aa11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 YAF2Q8IY57 180 aa11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 ZNF283Q8N7M2 679 aa11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 OR13D1Q8NGV5 346 aa11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 OR14L1PQ8NHC6 308 aa11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 MSI2Q96DH6 328 aaKnown RBP11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 TP53RKQ96S44 253 aa11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 CABLES2Q9BTV7 478 aa11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 SLC2A9Q9NRM0 540 aa11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 GAB2Q9UQC2 676 aa11.71□□□□□ -0.53
CCDC88C-201ENST00000331194 UNC13CQ8NB66 2214 aa11.71□□□□□ -0.54
CCDC88C-201ENST00000331194 ASXL3Q9C0F0 2248 aa11.71□□□□□ -0.54
CCDC88C-201ENST00000331194 DYNLT3P51808 116 aa11.71□□□□□ -0.54
CCDC88C-201ENST00000331194 GNMTQ14749 295 aa11.71□□□□□ -0.54
CCDC88C-201ENST00000331194 DMRTA1Q5VZB9 504 aa11.71□□□□□ -0.54
CCDC88C-201ENST00000331194 LIAT1Q6ZQX7 453 aa11.71□□□□□ -0.54
CCDC88C-201ENST00000331194 BATF2Q8N1L9 274 aa11.71□□□□□ -0.54
CCDC88C-201ENST00000331194 C18orf12Q96KH6 178 aa11.71□□□□□ -0.54
CCDC88C-201ENST00000331194 PITPNC1Q9UKF7 332 aa11.71□□□□□ -0.54
CCDC88C-201ENST00000331194 ZFP36L1Q07352 338 aaKnown RBP11.7□□□□□ -0.54
CCDC88C-201ENST00000331194 AARDQ4LEZ3 155 aa11.7□□□□□ -0.54
CCDC88C-201ENST00000331194 COL13A1Q5TAT6 717 aaPredicted RBP11.7□□□□□ -0.54
CCDC88C-201ENST00000331194 ARMC6Q6NXE6 501 aa11.7□□□□□ -0.54
CCDC88C-201ENST00000331194 THNSL2Q86YJ6 484 aa11.7□□□□□ -0.54
CCDC88C-201ENST00000331194 GPR137CQ8N3F9 429 aa11.7□□□□□ -0.54
CCDC88C-201ENST00000331194 THAP3Q8WTV1 239 aaPredicted RBP11.7□□□□□ -0.54
CCDC88C-201ENST00000331194 TMEM50AO95807 157 aa11.7□□□□□ -0.54
CCDC88C-201ENST00000331194 SFTPDP35247 375 aa11.7□□□□□ -0.54
CCDC88C-201ENST00000331194 FOXF1Q12946 379 aa11.7□□□□□ -0.54
CCDC88C-201ENST00000331194 TRA2AQ13595 282 aaKnown RBP eCLIP11.7□□□□□ -0.54
CCDC88C-201ENST00000331194 TMEM196Q5HYL7 178 aa11.7□□□□□ -0.54
CCDC88C-201ENST00000331194 ZNF506Q5JVG8 444 aa11.7□□□□□ -0.54
CCDC88C-201ENST00000331194 FAM90A2PQ658T7 463 aa11.7□□□□□ -0.54
CCDC88C-201ENST00000331194 ODF3L1Q8IXM7 274 aa11.7□□□□□ -0.54
CCDC88C-201ENST00000331194 TMEM183AQ8IXX5 376 aa11.7□□□□□ -0.54
CCDC88C-201ENST00000331194 LYZL4Q96KX0 146 aa11.7□□□□□ -0.54
CCDC88C-201ENST00000331194 HIST1H2AAQ96QV6 131 aa11.7□□□□□ -0.54
CCDC88C-201ENST00000331194 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 FAM230AA0A1W2PPH8 454 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 ALG1L2C9J202 215 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 DDAH2O95865 285 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 HSPB1P04792 205 aaKnown RBP11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 IL13RA2Q14627 380 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 TEX38Q6PEX7 206 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 H1FNTQ75WM6 255 aaPredicted RBP11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 GRINAQ7Z429 371 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 CMTM1Q8IZ96 169 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 SLC38A9Q8NBW4 561 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 ZNF721Q8TF20 911 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 RAB24Q969Q5 203 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 SLC46A1Q96NT5 459 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 ZNF665Q9H7R5 613 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 FRYQ5TBA9 3013 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 XKRY2A2RUG3 117 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 FRG2CA6NGY1 282 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 F5H5K5 113 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 CLDN34H7C241 214 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 DVL1O14640 695 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 DLEU1O43261 78 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 SPRY1O43609 319 aaPredicted RBP11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 HLA-HP01893 362 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 CEACAM6P40199 344 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 ALDH3B1P43353 468 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 ERVS71-1P61550 626 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 HHEXQ03014 270 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 ZNF154Q13106 437 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 CLN3Q13286 438 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 SLC35E3Q7Z769 313 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 LGI3Q8N145 548 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 SSC4DQ8WTU2 575 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 H3BP45 60 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 APODP05090 189 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 DNLZQ5SXM8 178 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 LCN15Q6UWW0 184 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 Q6ZSR6 202 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 TMEM252Q8N6L7 170 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 OR1P1Q8NH06 330 aa11.69□□□□□ -0.54
CCDC88C-201ENST00000331194 SMDT1Q9H4I9 107 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms