RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 PSG7Q13046 419 aa13.91□□□□□ -0.18
PDLIM1-201ENST00000329399 MOGAT2Q3SYC2 334 aa13.91□□□□□ -0.18
PDLIM1-201ENST00000329399 RSBN1Q5VWQ0 802 aaPredicted RBP13.91□□□□□ -0.18
PDLIM1-201ENST00000329399 RNF144BQ7Z419 303 aa13.91□□□□□ -0.18
PDLIM1-201ENST00000329399 NKX3-1Q99801 234 aaPredicted RBP13.91□□□□□ -0.18
PDLIM1-201ENST00000329399 PURGQ9UJV8 347 aaKnown RBP13.91□□□□□ -0.18
PDLIM1-201ENST00000329399 ANAPC10Q9UM13 185 aa13.91□□□□□ -0.18
PDLIM1-201ENST00000329399 FN1P02751 2386 aaKnown RBP13.91□□□□□ -0.18
PDLIM1-201ENST00000329399 C2CD3Q4AC94 2353 aa13.9□□□□□ -0.18
PDLIM1-201ENST00000329399 INMT-MINDY4F8WBC2 141 aa13.9□□□□□ -0.18
PDLIM1-201ENST00000329399 TRAPPC2LH3BP13 241 aa13.9□□□□□ -0.18
PDLIM1-201ENST00000329399 CD74P04233 296 aa13.9□□□□□ -0.18
PDLIM1-201ENST00000329399 GLAP06280 429 aa13.9□□□□□ -0.18
PDLIM1-201ENST00000329399 ZNF250P15622 560 aa13.9□□□□□ -0.18
PDLIM1-201ENST00000329399 HLA-DMAP28067 261 aa13.9□□□□□ -0.18
PDLIM1-201ENST00000329399 BTCP35070 178 aa13.9□□□□□ -0.18
PDLIM1-201ENST00000329399 HAAOP46952 286 aa13.9□□□□□ -0.18
PDLIM1-201ENST00000329399 GPM6AP51674 278 aa13.9□□□□□ -0.18
PDLIM1-201ENST00000329399 TMEM50BP56557 158 aa13.9□□□□□ -0.18
PDLIM1-201ENST00000329399 SELENOVP59797 346 aa13.9□□□□□ -0.18
PDLIM1-201ENST00000329399 RGS7BPQ6MZT1 257 aaPredicted RBP13.9□□□□□ -0.18
PDLIM1-201ENST00000329399 STEAP1BQ6NZ63 245 aa13.9□□□□□ -0.18
PDLIM1-201ENST00000329399 SLC25A26Q70HW3 274 aa13.9□□□□□ -0.18
PDLIM1-201ENST00000329399 Q71RC1 249 aaPredicted RBP13.9□□□□□ -0.18
PDLIM1-201ENST00000329399 CADM3Q8N126 398 aa13.9□□□□□ -0.18
PDLIM1-201ENST00000329399 ZNF525Q8N782 197 aa13.9□□□□□ -0.18
PDLIM1-201ENST00000329399 OR13G1Q8NGZ3 307 aa13.9□□□□□ -0.18
PDLIM1-201ENST00000329399 OR56B4Q8NH76 319 aa13.9□□□□□ -0.18
PDLIM1-201ENST00000329399 MRPL24Q96A35 216 aaKnown RBP13.9□□□□□ -0.18
PDLIM1-201ENST00000329399 VRK1Q99986 396 aaPredicted RBP13.9□□□□□ -0.18
PDLIM1-201ENST00000329399 SPACA1Q9HBV2 294 aa13.9□□□□□ -0.18
PDLIM1-201ENST00000329399 IFT46Q9NQC8 304 aa13.9□□□□□ -0.18
PDLIM1-201ENST00000329399 IGHV4-30-2A0A087WSY4 118 aa13.89□□□□□ -0.19
PDLIM1-201ENST00000329399 TMEM235A6NFC5 223 aa13.89□□□□□ -0.19
PDLIM1-201ENST00000329399 POM121CA8CG34 1229 aa13.89□□□□□ -0.19
PDLIM1-201ENST00000329399 ZNF736B4DX44 427 aaPredicted RBP13.89□□□□□ -0.19
PDLIM1-201ENST00000329399 J3QT63 122 aa13.89□□□□□ -0.19
PDLIM1-201ENST00000329399 SOCS1O15524 211 aa13.89□□□□□ -0.19
PDLIM1-201ENST00000329399 PRAF2O60831 178 aa13.89□□□□□ -0.19
PDLIM1-201ENST00000329399 CA6P23280 308 aa13.89□□□□□ -0.19
PDLIM1-201ENST00000329399 GIFP27352 417 aa13.89□□□□□ -0.19
PDLIM1-201ENST00000329399 FGF12P61328 243 aa13.89□□□□□ -0.19
PDLIM1-201ENST00000329399 MPV17LQ2QL34 196 aa13.89□□□□□ -0.19
PDLIM1-201ENST00000329399 ALKBH6Q3KRA9 238 aa13.89□□□□□ -0.19
PDLIM1-201ENST00000329399 RNASE12Q5GAN4 147 aaKnown RBP13.89□□□□□ -0.19
PDLIM1-201ENST00000329399 SPATA46Q5T0L3 261 aa13.89□□□□□ -0.19
PDLIM1-201ENST00000329399 TRAPPC6BQ86SZ2 158 aa13.89□□□□□ -0.19
PDLIM1-201ENST00000329399 ST8SIA4Q92187 359 aa13.89□□□□□ -0.19
PDLIM1-201ENST00000329399 GTF3AQ92664 365 aaKnown RBP13.89□□□□□ -0.19
PDLIM1-201ENST00000329399 C18orf12Q96KH6 178 aa13.89□□□□□ -0.19
PDLIM1-201ENST00000329399 NICN1Q9BSH3 213 aa13.89□□□□□ -0.19
PDLIM1-201ENST00000329399 CHST6Q9GZX3 395 aa13.89□□□□□ -0.19
PDLIM1-201ENST00000329399 OR51I2Q9H344 312 aa13.89□□□□□ -0.19
PDLIM1-201ENST00000329399 PLEKHJ1Q9NW61 149 aa13.89□□□□□ -0.19
PDLIM1-201ENST00000329399 SCP2D1Q9UJQ7 156 aa13.89□□□□□ -0.19
PDLIM1-201ENST00000329399 A0A0A6YYD4 124 aa13.88□□□□□ -0.19
PDLIM1-201ENST00000329399 VSTM5A8MXK1 200 aa13.88□□□□□ -0.19
PDLIM1-201ENST00000329399 RNF223E7ERA6 249 aa13.88□□□□□ -0.19
PDLIM1-201ENST00000329399 SPRY1O43609 319 aaPredicted RBP13.88□□□□□ -0.19
PDLIM1-201ENST00000329399 F12P00748 615 aaPredicted RBP13.88□□□□□ -0.19
PDLIM1-201ENST00000329399 GNB3P16520 340 aa13.88□□□□□ -0.19
PDLIM1-201ENST00000329399 RBM11P57052 281 aaKnown RBP13.88□□□□□ -0.19
PDLIM1-201ENST00000329399 SNRPD2P62316 118 aaKnown RBP13.88□□□□□ -0.19
PDLIM1-201ENST00000329399 OR8G1Q15617 311 aa13.88□□□□□ -0.19
PDLIM1-201ENST00000329399 ARHGAP5-AS1Q96IT6 56 aa13.88□□□□□ -0.19
PDLIM1-201ENST00000329399 SLC25A21Q9BQT8 299 aaPredicted RBP13.88□□□□□ -0.19
PDLIM1-201ENST00000329399 PECRQ9BY49 303 aa13.88□□□□□ -0.19
PDLIM1-201ENST00000329399 DUSP13Q9UII6 198 aa13.88□□□□□ -0.19
PDLIM1-201ENST00000329399 ST3GAL6Q9Y274 331 aa13.88□□□□□ -0.19
PDLIM1-201ENST00000329399 CHD3Q12873 2000 aaKnown RBP13.88□□□□□ -0.19
PDLIM1-201ENST00000329399 ABCA2Q9BZC7 2435 aa13.88□□□□□ -0.19
PDLIM1-201ENST00000329399 NAV3Q8IVL0 2385 aa13.88□□□□□ -0.19
PDLIM1-201ENST00000329399 IGKV1-12A0A0C4DH73 117 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 DISC1C4P0D8 188 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 TIMM8AO60220 97 aaPredicted RBP13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 IGKV1D-12P01611 117 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 IGHV3-13P01766 116 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 MT-ND4P03905 459 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 FUT3P21217 361 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 MPV17P39210 176 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 EFNA4P52798 201 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 MRPS15P82914 257 aaKnown RBP13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 ARFRP1Q13795 201 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 IL13RA2Q14627 380 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 RBMS2Q15434 407 aaKnown RBP13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 PLAC9Q5JTB6 97 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 ZNF554Q86TJ5 538 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 CALHM1Q8IU99 346 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 CELF2-AS1Q8N7Q2 184 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 BHLHE23Q8NDY6 225 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 GCDHQ92947 438 aaPredicted RBP13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 MED30Q96HR3 178 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 PRRT1Q99946 306 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 ADAT1Q9BUB4 502 aaKnown RBP13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 MMP28Q9H239 520 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 SLC2A8Q9NY64 477 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 CR1P17927 2039 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 A0A096LNT2 108 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 A0A1W2PP11 408 aa13.87□□□□□ -0.19
PDLIM1-201ENST00000329399 LYNX1G3V0Z9 82 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms