RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 HOXD4P09016 255 aaPredicted RBP10.2□□□□□ -0.78
VPS39-201ENST00000318006 DYNLT3P51808 116 aa10.2□□□□□ -0.78
VPS39-201ENST00000318006 OR8B8Q15620 311 aa10.2□□□□□ -0.78
VPS39-201ENST00000318006 C6orf201Q7Z4U5 140 aa10.2□□□□□ -0.78
VPS39-201ENST00000318006 TSEN54Q7Z6J9 526 aaKnown RBP10.2□□□□□ -0.78
VPS39-201ENST00000318006 OR10G8Q8NGN5 311 aa10.2□□□□□ -0.78
VPS39-201ENST00000318006 CLDN23Q96B33 292 aa10.2□□□□□ -0.78
VPS39-201ENST00000318006 TBX15Q96SF7 602 aa10.2□□□□□ -0.78
VPS39-201ENST00000318006 COMMD5Q9GZQ3 224 aa10.2□□□□□ -0.78
VPS39-201ENST00000318006 DEFB127Q9H1M4 99 aa10.2□□□□□ -0.78
VPS39-201ENST00000318006 CT62P0C5K7 136 aa10.2□□□□□ -0.78
VPS39-201ENST00000318006 CD99P14209 185 aa10.2□□□□□ -0.78
VPS39-201ENST00000318006 HLA-GP17693 338 aa10.2□□□□□ -0.78
VPS39-201ENST00000318006 RTL8BQ17RB0 113 aa10.2□□□□□ -0.78
VPS39-201ENST00000318006 NHLRC3Q5JS37 347 aa10.2□□□□□ -0.78
VPS39-201ENST00000318006 ZNF770Q6IQ21 691 aaPredicted RBP10.2□□□□□ -0.78
VPS39-201ENST00000318006 RGPD4Q7Z3J3 1758 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 MCHR2Q969V1 340 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 TSPAN32Q96QS1 320 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 FAAP24Q9BTP7 215 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 PRR13Q9NZ81 148 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 CEP290O15078 2479 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 IGHV3-15A0A0B4J1V0 119 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 M0R2Z0 102 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 SIGLEC5O15389 551 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 OR5AL1P0C617 328 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 SIGLEC14Q08ET2 396 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 DCAF12L2Q5VW00 463 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 DHRS7BQ6IAN0 325 aaPredicted RBP10.19□□□□□ -0.78
VPS39-201ENST00000318006 ZNF880Q6PDB4 577 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 LIAT1Q6ZQX7 453 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 OR4D11Q8NGI4 311 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 MAFAQ8NHW3 353 aaPredicted RBP10.19□□□□□ -0.78
VPS39-201ENST00000318006 ROBO4Q8WZ75 1007 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 ZFP64Q9NPA5 681 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.19□□□□□ -0.78
VPS39-201ENST00000318006 SLC45A2Q9UMX9 530 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 TNFSF15O95150 251 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 GCGP01275 180 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 VSIG10L2P0DP72 767 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 OR3A4PP47883 348 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 TRA2AQ13595 282 aaKnown RBP eCLIP10.19□□□□□ -0.78
VPS39-201ENST00000318006 IL11RAQ14626 422 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 ZNF141Q15928 474 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 OR11H4Q8NGC9 324 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 RHOVQ96L33 236 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 NDFIP1Q9BT67 221 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 CACNG5Q9UF02 275 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 RBBP6Q7Z6E9 1792 aaKnown RBP10.19□□□□□ -0.78
VPS39-201ENST00000318006 SCN4AP35499 1836 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 TRBV23-1A0A0A0MS06 115 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 A0A1W2PPV9 198 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 ALG1L2C9J202 215 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 TNFSF11O14788 317 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 HYAL3O43820 417 aaPredicted RBP10.19□□□□□ -0.78
VPS39-201ENST00000318006 FGF2P09038 288 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 ARR3P36575 388 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 DSCR4P56555 118 aaPredicted RBP10.19□□□□□ -0.78
VPS39-201ENST00000318006 MPV17LQ2QL34 196 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 MRGPRGQ86SM5 289 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 GALMQ96C23 342 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 TMEM147Q9BVK8 224 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 FRRS1LQ9P0K9 344 aa10.19□□□□□ -0.78
VPS39-201ENST00000318006 C5orf49A4QMS7 147 aa10.18□□□□□ -0.78
VPS39-201ENST00000318006 SCGB1C2P0DMR2 95 aa10.18□□□□□ -0.78
VPS39-201ENST00000318006 CHRNB4P30926 498 aa10.18□□□□□ -0.78
VPS39-201ENST00000318006 CDAP32320 146 aa10.18□□□□□ -0.78
VPS39-201ENST00000318006 KHDC3LQ587J8 217 aa10.18□□□□□ -0.78
VPS39-201ENST00000318006 OR11G2Q8NGC1 345 aa10.18□□□□□ -0.78
VPS39-201ENST00000318006 SIAH2O43255 324 aa10.18□□□□□ -0.78
VPS39-201ENST00000318006 DHRS3O75911 302 aa10.18□□□□□ -0.78
VPS39-201ENST00000318006 HLA-DQB1P01920 261 aa10.18□□□□□ -0.78
VPS39-201ENST00000318006 FAM3BP58499 235 aaPredicted RBP10.18□□□□□ -0.78
VPS39-201ENST00000318006 SPRED2Q7Z698 418 aa10.18□□□□□ -0.78
VPS39-201ENST00000318006 ZNF738Q8NE65 137 aa10.18□□□□□ -0.78
VPS39-201ENST00000318006 DPF1Q92782 380 aa10.18□□□□□ -0.78
VPS39-201ENST00000318006 ATG2BQ96BY7 2078 aa10.18□□□□□ -0.78
VPS39-201ENST00000318006 SEC16AO15027 2179 aa10.18□□□□□ -0.78
VPS39-201ENST00000318006 LOC102724200A0A096LPH7 203 aaPredicted RBP10.18□□□□□ -0.78
VPS39-201ENST00000318006 CLEC3BP05452 202 aa10.18□□□□□ -0.78
VPS39-201ENST00000318006 ANKRD34CP0C6C1 535 aa10.18□□□□□ -0.78
VPS39-201ENST00000318006 FUT7Q11130 342 aa10.18□□□□□ -0.78
VPS39-201ENST00000318006 TMEM97Q5BJF2 176 aa10.18□□□□□ -0.78
VPS39-201ENST00000318006 DHRS11Q6UWP2 260 aa10.18□□□□□ -0.78
VPS39-201ENST00000318006 LINC00469Q8N7U9 141 aa10.18□□□□□ -0.78
VPS39-201ENST00000318006 VN1R17PQ8TDU5 208 aa10.18□□□□□ -0.78
VPS39-201ENST00000318006 TLNRD1Q9H1K6 362 aa10.18□□□□□ -0.78
VPS39-201ENST00000318006 HSF4Q9ULV5 492 aa10.18□□□□□ -0.78
VPS39-201ENST00000318006 EPHA8P29322 1005 aaPredicted RBP10.18□□□□□ -0.78
VPS39-201ENST00000318006 MYBPHQ13203 477 aa10.18□□□□□ -0.78
VPS39-201ENST00000318006 OR1A1Q9P1Q5 309 aa10.18□□□□□ -0.78
VPS39-201ENST00000318006 OR4C45A6NMZ5 311 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 PDCD6O75340 191 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 RHOBP62745 196 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 EWSR1Q01844 656 aaKnown RBP eCLIP10.17□□□□□ -0.78
VPS39-201ENST00000318006 FMODQ06828 376 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 HIST3H3Q16695 136 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 Q1RN00 199 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 LYRM7Q5U5X0 104 aa10.17□□□□□ -0.78
VPS39-201ENST00000318006 OR2V1Q8NHB1 315 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms