RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 PIGMQ9H3S5 423 aa14.36□□□□□ -0.11
VPS54-201ENST00000272322 ZNF552Q9H707 407 aaPredicted RBP14.36□□□□□ -0.11
VPS54-201ENST00000272322 ZNF732B4DXR9 585 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 H3BP45 60 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 SYNGR1O43759 233 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 ATG12O94817 140 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 MUC1P15941 1255 aaPredicted RBP14.35□□□□□ -0.11
VPS54-201ENST00000272322 PMP22Q01453 160 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 FBXW12Q6X9E4 464 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 Q6ZRG5 221 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 PNPLA5Q7Z6Z6 429 aaPredicted RBP14.35□□□□□ -0.11
VPS54-201ENST00000272322 LDLRAD3Q86YD5 345 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 ZNF100Q8IYN0 542 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 CPT1CQ8TCG5 803 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 CNTNAP3BQ96NU0 1288 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 CNTNAP3Q9BZ76 1288 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 RHOFQ9HBH0 211 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 AMDHD2Q9Y303 409 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 PKDREJQ9NTG1 2253 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 IGLV3-1P01715 115 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 MBPP02686 304 aaPredicted RBP14.35□□□□□ -0.11
VPS54-201ENST00000272322 ICAM2P13598 275 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 DAOP14920 347 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 SWI5Q1ZZU3 235 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 TMEM268Q5VZI3 342 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 MCEMP1Q8IX19 187 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 LHFPL5Q8TAF8 219 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 SH3BGRL3Q9H299 93 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 GHRLQ9UBU3 117 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 FOXI3A8MTJ6 420 aaPredicted RBP14.35□□□□□ -0.11
VPS54-201ENST00000272322 NEURL1O76050 574 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 CST2P09228 141 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 OR8U9P0C7N5 309 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 FOXO1Q12778 655 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 OR8U1Q8NH10 309 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 SPSB1Q96BD6 273 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 SLC5A7Q9GZV3 580 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 BCO1Q9HAY6 547 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 PLA2G2EQ9NZK7 142 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 MEMO1Q9Y316 297 aa14.35□□□□□ -0.11
VPS54-201ENST00000272322 C9JQL5 133 aa14.34□□□□□ -0.11
VPS54-201ENST00000272322 SERPINA7P05543 415 aa14.34□□□□□ -0.11
VPS54-201ENST00000272322 RPL35P42766 123 aaKnown RBP14.34□□□□□ -0.11
VPS54-201ENST00000272322 FAM189A2Q15884 450 aa14.34□□□□□ -0.11
VPS54-201ENST00000272322 OR2T2Q6IF00 324 aa14.34□□□□□ -0.11
VPS54-201ENST00000272322 CCDC36Q8IYA8 594 aa14.34□□□□□ -0.11
VPS54-201ENST00000272322 OR2M7Q8NG81 312 aa14.34□□□□□ -0.11
VPS54-201ENST00000272322 TP53RKQ96S44 253 aa14.34□□□□□ -0.11
VPS54-201ENST00000272322 PRRX2Q99811 253 aa14.34□□□□□ -0.11
VPS54-201ENST00000272322 PRSS50Q9UI38 385 aa14.34□□□□□ -0.11
VPS54-201ENST00000272322 ARGFXA6NJG6 315 aa14.34□□□□□ -0.11
VPS54-201ENST00000272322 WISP2O76076 250 aa14.34□□□□□ -0.11
VPS54-201ENST00000272322 PRDX4Q13162 271 aa14.34□□□□□ -0.11
VPS54-201ENST00000272322 SSPNQ14714 243 aa14.34□□□□□ -0.11
VPS54-201ENST00000272322 NUFIP2Q7Z417 695 aaKnown RBP14.34□□□□□ -0.11
VPS54-201ENST00000272322 EXTL1Q92935 676 aa14.34□□□□□ -0.11
VPS54-201ENST00000272322 TM2D1Q9BX74 207 aa14.34□□□□□ -0.11
VPS54-201ENST00000272322 UBE2J1Q9Y385 318 aaPredicted RBP14.34□□□□□ -0.11
VPS54-201ENST00000272322 USF3Q68DE3 2245 aa14.34□□□□□ -0.11
VPS54-201ENST00000272322 hCG_38984A0A1B0GV85 526 aa14.34□□□□□ -0.11
VPS54-201ENST00000272322 FAM157CP0CG43 387 aa14.34□□□□□ -0.11
VPS54-201ENST00000272322 ZNF16P17020 682 aaPredicted RBP14.34□□□□□ -0.11
VPS54-201ENST00000272322 MPZP25189 248 aa14.34□□□□□ -0.11
VPS54-201ENST00000272322 OR51H1Q8NH63 302 aa14.34□□□□□ -0.11
VPS54-201ENST00000272322 AKR1E2Q96JD6 320 aa14.34□□□□□ -0.11
VPS54-201ENST00000272322 MED9Q9NWA0 146 aa14.34□□□□□ -0.11
VPS54-201ENST00000272322 OR6C6A6NF89 314 aa14.33□□□□□ -0.12
VPS54-201ENST00000272322 CST7O76096 145 aa14.33□□□□□ -0.12
VPS54-201ENST00000272322 GLP1RP43220 463 aa14.33□□□□□ -0.12
VPS54-201ENST00000272322 ZNF133P52736 654 aaPredicted RBP14.33□□□□□ -0.12
VPS54-201ENST00000272322 POLR2GP62487 172 aaKnown RBP eCLIP14.33□□□□□ -0.12
VPS54-201ENST00000272322 HIST1H3AP68431 136 aa14.33□□□□□ -0.12
VPS54-201ENST00000272322 SRSF4Q08170 494 aaKnown RBP14.33□□□□□ -0.12
VPS54-201ENST00000272322 HIST2H3PS2Q5TEC6 136 aa14.33□□□□□ -0.12
VPS54-201ENST00000272322 HIST2H3AQ71DI3 136 aa14.33□□□□□ -0.12
VPS54-201ENST00000272322 ZNF286AQ9HBT8 521 aa14.33□□□□□ -0.12
VPS54-201ENST00000272322 BOKQ9UMX3 212 aaPredicted RBP14.33□□□□□ -0.12
VPS54-201ENST00000272322 LIPGQ9Y5X9 500 aa14.33□□□□□ -0.12
VPS54-201ENST00000272322 ZNF816-ZNF321PA0A0X1KG74 233 aa14.33□□□□□ -0.12
VPS54-201ENST00000272322 SNAPC5O75971 98 aa14.33□□□□□ -0.12
VPS54-201ENST00000272322 STOML3Q8TAV4 291 aa14.33□□□□□ -0.12
VPS54-201ENST00000272322 SF3B5Q9BWJ5 86 aaKnown RBP14.33□□□□□ -0.12
VPS54-201ENST00000272322 FAM24AA6NFZ4 105 aa14.32□□□□□ -0.12
VPS54-201ENST00000272322 PRKACAP17612 351 aa14.32□□□□□ -0.12
VPS54-201ENST00000272322 GNRHRP30968 328 aa14.32□□□□□ -0.12
VPS54-201ENST00000272322 SRSF6Q13247 344 aaKnown RBP14.32□□□□□ -0.12
VPS54-201ENST00000272322 TRA2AQ13595 282 aaKnown RBP eCLIP14.32□□□□□ -0.12
VPS54-201ENST00000272322 LHFPL2Q6ZUX7 228 aa14.32□□□□□ -0.12
VPS54-201ENST00000272322 CXorf67Q86X51 503 aaPredicted RBP14.32□□□□□ -0.12
VPS54-201ENST00000272322 TMEM251Q8N6I4 163 aa14.32□□□□□ -0.12
VPS54-201ENST00000272322 SLC35G3Q8N808 338 aa14.32□□□□□ -0.12
VPS54-201ENST00000272322 GLYATL2Q8WU03 294 aa14.32□□□□□ -0.12
VPS54-201ENST00000272322 KCNE4Q8WWG9 221 aa14.32□□□□□ -0.12
VPS54-201ENST00000272322 CPNE4Q96A23 557 aaPredicted RBP14.32□□□□□ -0.12
VPS54-201ENST00000272322 STRADBQ9C0K7 418 aa14.32□□□□□ -0.12
VPS54-201ENST00000272322 LPAR3Q9UBY5 353 aa14.32□□□□□ -0.12
VPS54-201ENST00000272322 HEATR1Q9H583 2144 aaKnown RBP14.32□□□□□ -0.12
VPS54-201ENST00000272322 OTOGLQ3ZCN5 2332 aa14.32□□□□□ -0.12
VPS54-201ENST00000272322 SYNGR4O95473 234 aa14.32□□□□□ -0.12
VPS54-201ENST00000272322 CA6P23280 308 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms