RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 TIMP3P35625 211 aa13.13□□□□□ -0.31
SF3B4-201ENST00000271628 UCP2P55851 309 aa13.13□□□□□ -0.31
SF3B4-201ENST00000271628 RBM11P57052 281 aaKnown RBP13.13□□□□□ -0.31
SF3B4-201ENST00000271628 PXDC1Q5TGL8 231 aa13.13□□□□□ -0.31
SF3B4-201ENST00000271628 SEM1Q6ZVN7 128 aa13.13□□□□□ -0.31
SF3B4-201ENST00000271628 ZNF573Q86YE8 665 aa13.13□□□□□ -0.31
SF3B4-201ENST00000271628 NAXEQ8NCW5 288 aa13.13□□□□□ -0.31
SF3B4-201ENST00000271628 BHLHE23Q8NDY6 225 aa13.13□□□□□ -0.31
SF3B4-201ENST00000271628 OR51B6Q9H340 312 aa13.13□□□□□ -0.31
SF3B4-201ENST00000271628 TUBG2Q9NRH3 451 aa13.13□□□□□ -0.31
SF3B4-201ENST00000271628 BOD1L1Q8NFC6 3051 aa13.13□□□□□ -0.31
SF3B4-201ENST00000271628 DCHS1Q96JQ0 3298 aa13.13□□□□□ -0.31
SF3B4-201ENST00000271628 RRP8O43159 456 aaKnown RBP13.12□□□□□ -0.31
SF3B4-201ENST00000271628 CELA3BP08861 270 aa13.12□□□□□ -0.31
SF3B4-201ENST00000271628 SELEP16581 610 aa13.12□□□□□ -0.31
SF3B4-201ENST00000271628 DTYMKP23919 212 aa13.12□□□□□ -0.31
SF3B4-201ENST00000271628 TAS2R31P59538 309 aa13.12□□□□□ -0.31
SF3B4-201ENST00000271628 PPP1CBP62140 327 aa13.12□□□□□ -0.31
SF3B4-201ENST00000271628 GNG3P63215 75 aa13.12□□□□□ -0.31
SF3B4-201ENST00000271628 PIGYQ3MUY2 71 aa13.12□□□□□ -0.31
SF3B4-201ENST00000271628 CHRFAM7AQ494W8 412 aa13.12□□□□□ -0.31
SF3B4-201ENST00000271628 C1orf185Q5T7R7 199 aa13.12□□□□□ -0.31
SF3B4-201ENST00000271628 OR2T2Q6IF00 324 aa13.12□□□□□ -0.31
SF3B4-201ENST00000271628 OR10AD1Q8NGE0 317 aa13.12□□□□□ -0.31
SF3B4-201ENST00000271628 VRK1Q99986 396 aaPredicted RBP13.12□□□□□ -0.31
SF3B4-201ENST00000271628 CMSS1Q9BQ75 279 aaKnown RBP13.12□□□□□ -0.31
SF3B4-201ENST00000271628 FAAP24Q9BTP7 215 aa13.12□□□□□ -0.31
SF3B4-201ENST00000271628 ZNF701Q9NV72 531 aaPredicted RBP13.12□□□□□ -0.31
SF3B4-201ENST00000271628 ZNF629Q9UEG4 869 aaPredicted RBP13.12□□□□□ -0.31
SF3B4-201ENST00000271628 CUL9Q8IWT3 2517 aa13.12□□□□□ -0.31
SF3B4-201ENST00000271628 MGAQ8IWI9 3026 aa13.12□□□□□ -0.31
SF3B4-201ENST00000271628 CEACAM18A8MTB9 384 aa13.12□□□□□ -0.31
SF3B4-201ENST00000271628 TRAPPC2LH3BP13 241 aa13.12□□□□□ -0.31
SF3B4-201ENST00000271628 PDCD6O75340 191 aa13.12□□□□□ -0.31
SF3B4-201ENST00000271628 RAC2P15153 192 aa13.12□□□□□ -0.31
SF3B4-201ENST00000271628 MYPOPQ86VE0 399 aaPredicted RBP13.12□□□□□ -0.31
SF3B4-201ENST00000271628 CXorf67Q86X51 503 aaPredicted RBP13.12□□□□□ -0.31
SF3B4-201ENST00000271628 WDR31Q8NA23 367 aa13.12□□□□□ -0.31
SF3B4-201ENST00000271628 THAP6Q8TBB0 222 aa13.12□□□□□ -0.31
SF3B4-201ENST00000271628 SEC22AQ96IW7 307 aa13.12□□□□□ -0.31
SF3B4-201ENST00000271628 PLK3Q9H4B4 646 aa13.12□□□□□ -0.31
SF3B4-201ENST00000271628 OR2AT4A6NND4 320 aa13.11□□□□□ -0.31
SF3B4-201ENST00000271628 LGALS8O00214 317 aa13.11□□□□□ -0.31
SF3B4-201ENST00000271628 FUT3P21217 361 aa13.11□□□□□ -0.31
SF3B4-201ENST00000271628 FGF12P61328 243 aa13.11□□□□□ -0.31
SF3B4-201ENST00000271628 BTN1A1Q13410 526 aa13.11□□□□□ -0.31
SF3B4-201ENST00000271628 TSC22D1Q15714 1073 aa13.11□□□□□ -0.31
SF3B4-201ENST00000271628 C1orf174Q8IYL3 243 aa13.11□□□□□ -0.31
SF3B4-201ENST00000271628 INO80EQ8NBZ0 244 aaPredicted RBP13.11□□□□□ -0.31
SF3B4-201ENST00000271628 FAM57AQ8TBR7 257 aa13.11□□□□□ -0.31
SF3B4-201ENST00000271628 OR2J1Q9GZK6 312 aa13.11□□□□□ -0.31
SF3B4-201ENST00000271628 FGF23Q9GZV9 251 aaPredicted RBP13.11□□□□□ -0.31
SF3B4-201ENST00000271628 OPN3Q9H1Y3 402 aaPredicted RBP13.11□□□□□ -0.31
SF3B4-201ENST00000271628 CRIM1Q9NZV1 1036 aa13.11□□□□□ -0.31
SF3B4-201ENST00000271628 AK3Q9UIJ7 227 aa13.11□□□□□ -0.31
SF3B4-201ENST00000271628 FAM215AQ9Y5M1 114 aa13.11□□□□□ -0.31
SF3B4-201ENST00000271628 RNF222A6NCQ9 220 aa13.11□□□□□ -0.31
SF3B4-201ENST00000271628 ECI1P42126 302 aa13.11□□□□□ -0.31
SF3B4-201ENST00000271628 NPBWR2P48146 333 aa13.11□□□□□ -0.31
SF3B4-201ENST00000271628 LRRC37A5PQ49AS3 106 aa13.11□□□□□ -0.31
SF3B4-201ENST00000271628 SPATA46Q5T0L3 261 aa13.11□□□□□ -0.31
SF3B4-201ENST00000271628 ZNF324BQ6AW86 544 aaPredicted RBP13.11□□□□□ -0.31
SF3B4-201ENST00000271628 FAM169BQ8N8A8 192 aa13.11□□□□□ -0.31
SF3B4-201ENST00000271628 OR1J1Q8NGS3 322 aa13.11□□□□□ -0.31
SF3B4-201ENST00000271628 SLAMF9Q96A28 289 aa13.11□□□□□ -0.31
SF3B4-201ENST00000271628 SULT4A1Q9BR01 284 aa13.11□□□□□ -0.31
SF3B4-201ENST00000271628 RHOFQ9HBH0 211 aa13.11□□□□□ -0.31
SF3B4-201ENST00000271628 EHFQ9NZC4 300 aa13.11□□□□□ -0.31
SF3B4-201ENST00000271628 TP53TG5Q9Y2B4 290 aa13.11□□□□□ -0.31
SF3B4-201ENST00000271628 AMDHD2Q9Y303 409 aa13.11□□□□□ -0.31
SF3B4-201ENST00000271628 DBX1A6NMT0 343 aa13.1□□□□□ -0.31
SF3B4-201ENST00000271628 CCSO14618 274 aa13.1□□□□□ -0.31
SF3B4-201ENST00000271628 TSPAN4O14817 238 aa13.1□□□□□ -0.31
SF3B4-201ENST00000271628 OR7C1O76099 320 aaPredicted RBP13.1□□□□□ -0.31
SF3B4-201ENST00000271628 CA6P23280 308 aa13.1□□□□□ -0.31
SF3B4-201ENST00000271628 CYCSP99999 105 aaKnown RBP13.1□□□□□ -0.31
SF3B4-201ENST00000271628 IL24Q13007 206 aa13.1□□□□□ -0.31
SF3B4-201ENST00000271628 TBR1Q16650 682 aa13.1□□□□□ -0.31
SF3B4-201ENST00000271628 MPV17LQ2QL34 196 aa13.1□□□□□ -0.31
SF3B4-201ENST00000271628 PAN3Q58A45 887 aaKnown RBP13.1□□□□□ -0.31
SF3B4-201ENST00000271628 BHLHA15Q7RTS1 189 aaPredicted RBP13.1□□□□□ -0.31
SF3B4-201ENST00000271628 LHFPL1Q86WI0 220 aa13.1□□□□□ -0.31
SF3B4-201ENST00000271628 RELL2Q8NC24 303 aaPredicted RBP13.1□□□□□ -0.31
SF3B4-201ENST00000271628 MARCH1Q8TCQ1 289 aa13.1□□□□□ -0.31
SF3B4-201ENST00000271628 PKIBQ9C010 78 aa13.1□□□□□ -0.31
SF3B4-201ENST00000271628 WDR13Q9H1Z4 485 aa13.1□□□□□ -0.31
SF3B4-201ENST00000271628 MTCH1Q9NZJ7 389 aa13.1□□□□□ -0.31
SF3B4-201ENST00000271628 LUZP4Q9P127 313 aa13.1□□□□□ -0.31
SF3B4-201ENST00000271628 ANXA10Q9UJ72 324 aa13.1□□□□□ -0.31
SF3B4-201ENST00000271628 GPR132Q9UNW8 380 aa13.1□□□□□ -0.31
SF3B4-201ENST00000271628 OR5H1A6NKK0 313 aa13.09□□□□□ -0.31
SF3B4-201ENST00000271628 BCL3P20749 454 aa13.09□□□□□ -0.31
SF3B4-201ENST00000271628 VAMP1P23763 118 aa13.09□□□□□ -0.31
SF3B4-201ENST00000271628 LUMP51884 338 aaPredicted RBP13.09□□□□□ -0.31
SF3B4-201ENST00000271628 SURF2Q15527 256 aaPredicted RBP13.09□□□□□ -0.31
SF3B4-201ENST00000271628 TMEM128Q5BJH2 165 aa13.09□□□□□ -0.31
SF3B4-201ENST00000271628 TMEM211Q6ICI0 200 aa13.09□□□□□ -0.31
SF3B4-201ENST00000271628 LINC00596Q86U02 117 aa13.09□□□□□ -0.31
SF3B4-201ENST00000271628 STPG2Q8N412 459 aa13.09□□□□□ -0.31
SF3B4-201ENST00000271628 SLC25A40Q8TBP6 338 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms