RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 UBE2NLQ5JXB2 153 aa8.24□□□□□ -1.09
CLN3-261ENST00000637686 METAP1DQ6UB28 335 aaPredicted RBP8.24□□□□□ -1.09
CLN3-261ENST00000637686 WDR82Q6UXN9 313 aa8.24□□□□□ -1.09
CLN3-261ENST00000637686 MKXQ8IYA7 352 aa8.24□□□□□ -1.09
CLN3-261ENST00000637686 Q8IYB0 196 aa8.24□□□□□ -1.09
CLN3-261ENST00000637686 GCSAMQ8N6F7 178 aa8.24□□□□□ -1.09
CLN3-261ENST00000637686 SCCPDHQ8NBX0 429 aa8.24□□□□□ -1.09
CLN3-261ENST00000637686 OR4D6Q8NGJ1 314 aa8.24□□□□□ -1.09
CLN3-261ENST00000637686 OR51F2Q8NH61 342 aa8.24□□□□□ -1.09
CLN3-261ENST00000637686 KCNG3Q8TAE7 436 aa8.24□□□□□ -1.09
CLN3-261ENST00000637686 ZNF671Q8TAW3 534 aa8.24□□□□□ -1.09
CLN3-261ENST00000637686 TRMT10AQ8TBZ6 339 aaKnown RBP8.24□□□□□ -1.09
CLN3-261ENST00000637686 LRRC29Q8WV35 223 aa8.24□□□□□ -1.09
CLN3-261ENST00000637686 TMEM186Q96B77 213 aa8.24□□□□□ -1.09
CLN3-261ENST00000637686 C1orf147Q96MC9 270 aaPredicted RBP8.24□□□□□ -1.09
CLN3-261ENST00000637686 GPER1Q99527 375 aa8.24□□□□□ -1.09
CLN3-261ENST00000637686 NUDT16L1Q9BRJ7 211 aaKnown RBP8.24□□□□□ -1.09
CLN3-261ENST00000637686 CST11Q9H112 138 aa8.24□□□□□ -1.09
CLN3-261ENST00000637686 ABCG5Q9H222 651 aa8.24□□□□□ -1.09
CLN3-261ENST00000637686 OR51I2Q9H344 312 aa8.24□□□□□ -1.09
CLN3-261ENST00000637686 TMEM160Q9NX00 188 aa8.24□□□□□ -1.09
CLN3-261ENST00000637686 POLDIP2Q9Y2S7 368 aa8.24□□□□□ -1.09
CLN3-261ENST00000637686 NSD1Q96L73 2696 aaPredicted RBP8.23□□□□□ -1.09
CLN3-261ENST00000637686 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.23□□□□□ -1.09
CLN3-261ENST00000637686 IGKV1-27A0A075B6S5 117 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 IGHV3OR15-7A0A075B7D8 119 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 TRAV20A0A0B4J274 112 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 OOEPA6NGQ2 149 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 TMEM14DPA8MWL7 114 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 F5H0A9 414 aaPredicted RBP8.23□□□□□ -1.09
CLN3-261ENST00000637686 H3BUI4 141 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 LGALS8O00214 317 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 AKR7A2O43488 359 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 FOXH1O75593 365 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 CYB5AP00167 134 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 RPS2P15880 293 aaKnown RBP8.23□□□□□ -1.09
CLN3-261ENST00000637686 MNDAP41218 407 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 POU3F4P49335 361 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 GMFBP60983 142 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 QRFPP83859 136 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 ZNF45Q02386 682 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 CHRFAM7AQ494W8 412 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 NHLRC3Q5JS37 347 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 FAM120AOSQ5T036 256 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 HES5Q5TA89 166 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 AWAT2Q6E213 333 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 ELP2Q6IA86 826 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 RAB12Q6IQ22 244 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 LYPD2Q6UXB3 125 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 BAIAP2L2Q6UXY1 529 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 IL17RELQ6ZVW7 336 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 ANGPTL5Q86XS5 388 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 OR10Z1Q8NGY1 313 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 C15orf40Q8WUR7 153 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 TNFAIP8L1Q8WVP5 186 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 TSC22D3Q99576 134 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 S100A13Q99584 98 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 BEX2Q9BXY8 128 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 C6orf62Q9GZU0 229 aaPredicted RBP8.23□□□□□ -1.09
CLN3-261ENST00000637686 SHARPINQ9H0F6 387 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 MIOXQ9UGB7 285 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 OR5V1Q9UGF6 321 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 CDC42EP3Q9UKI2 254 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 RAB22AQ9UL26 194 aa8.23□□□□□ -1.09
CLN3-261ENST00000637686 MRPS28Q9Y2Q9 187 aaKnown RBP8.23□□□□□ -1.09
CLN3-261ENST00000637686 SETD2Q9BYW2 2564 aaPredicted RBP8.22□□□□□ -1.09
CLN3-261ENST00000637686 NIPBLQ6KC79 2804 aaeCLIP8.22□□□□□ -1.09
CLN3-261ENST00000637686 SONP18583 2426 aaKnown RBP8.22□□□□□ -1.09
CLN3-261ENST00000637686 TRAV38-1A0A0B4J264 116 aa8.22□□□□□ -1.09
CLN3-261ENST00000637686 FAM230AA0A1W2PPH8 454 aa8.22□□□□□ -1.09
CLN3-261ENST00000637686 FAM90A10PA6NDY2 464 aa8.22□□□□□ -1.09
CLN3-261ENST00000637686 FAM90A18PA6NE21 464 aa8.22□□□□□ -1.09
CLN3-261ENST00000637686 FAM90A16PA6NEW6 464 aa8.22□□□□□ -1.09
CLN3-261ENST00000637686 FAM90A20PA6NIJ5 464 aa8.22□□□□□ -1.09
CLN3-261ENST00000637686 FAM90A8PA6NJQ4 464 aa8.22□□□□□ -1.09
CLN3-261ENST00000637686 FAM90A7PA6NKC0 464 aa8.22□□□□□ -1.09
CLN3-261ENST00000637686 FAM90A22PA8MWA6 464 aa8.22□□□□□ -1.09
CLN3-261ENST00000637686 FAM90A12PA8MX19 464 aa8.22□□□□□ -1.09
CLN3-261ENST00000637686 FAM90A5PA8MXJ8 464 aa8.22□□□□□ -1.09
CLN3-261ENST00000637686 FAM90A23PA8MXZ1 464 aa8.22□□□□□ -1.09
CLN3-261ENST00000637686 TNFRSF13BO14836 293 aaPredicted RBP8.22□□□□□ -1.09
CLN3-261ENST00000637686 PHF1O43189 567 aaPredicted RBP8.22□□□□□ -1.09
CLN3-261ENST00000637686 RHBDL1O75783 438 aa8.22□□□□□ -1.09
CLN3-261ENST00000637686 KDM4BO94953 1096 aa8.22□□□□□ -1.09
CLN3-261ENST00000637686 GYPAP02724 150 aa8.22□□□□□ -1.09
CLN3-261ENST00000637686 CHRM2P08172 466 aa8.22□□□□□ -1.09
CLN3-261ENST00000637686 FAM90A15PP0C7V4 464 aa8.22□□□□□ -1.09
CLN3-261ENST00000637686 FAM90A13PP0C7W8 464 aa8.22□□□□□ -1.09
CLN3-261ENST00000637686 FAM90A14PP0C7W9 464 aa8.22□□□□□ -1.09
CLN3-261ENST00000637686 FAM90A24PP0C7X0 464 aa8.22□□□□□ -1.09
CLN3-261ENST00000637686 SLC2A2P11168 524 aaPredicted RBP8.22□□□□□ -1.09
CLN3-261ENST00000637686 KCNJ8Q15842 424 aa8.22□□□□□ -1.09
CLN3-261ENST00000637686 C2orf76Q3KRA6 126 aa8.22□□□□□ -1.09
CLN3-261ENST00000637686 ESCO2Q56NI9 601 aa8.22□□□□□ -1.09
CLN3-261ENST00000637686 FAHD2BQ6P2I3 314 aaPredicted RBP8.22□□□□□ -1.09
CLN3-261ENST00000637686 GLIPR1L1Q6UWM5 242 aa8.22□□□□□ -1.09
CLN3-261ENST00000637686 DCDC5Q6ZRR9 648 aa8.22□□□□□ -1.09
CLN3-261ENST00000637686 LINC00596Q86U02 117 aa8.22□□□□□ -1.09
CLN3-261ENST00000637686 CCDC190Q86UF4 302 aa8.22□□□□□ -1.09
CLN3-261ENST00000637686 FAM90A1Q86YD7 464 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms