RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 SLAMF9Q96A28 289 aa16.91■□□□□ 0.3
VPS53-216ENST00000574029 LINC00312Q9Y6C7 94 aa16.91■□□□□ 0.3
VPS53-216ENST00000574029 SESN1Q9Y6P5 492 aa16.91■□□□□ 0.3
VPS53-216ENST00000574029 IGHV2-26A0A0B4J1V2 119 aa16.9■□□□□ 0.3
VPS53-216ENST00000574029 AZGP1P25311 298 aaKnown RBP16.9■□□□□ 0.3
VPS53-216ENST00000574029 FUT6P51993 359 aa16.9■□□□□ 0.3
VPS53-216ENST00000574029 SLC34A1Q06495 639 aa16.9■□□□□ 0.3
VPS53-216ENST00000574029 GABPB1Q06547 395 aaPredicted RBP16.9■□□□□ 0.3
VPS53-216ENST00000574029 SLX4IPQ5VYV7 408 aa16.9■□□□□ 0.3
VPS53-216ENST00000574029 SSX6Q7RTT6 188 aa16.9■□□□□ 0.3
VPS53-216ENST00000574029 CATSPERDQ86XM0 798 aa16.9■□□□□ 0.3
VPS53-216ENST00000574029 EGFL6Q8IUX8 553 aa16.9■□□□□ 0.3
VPS53-216ENST00000574029 ZNF676Q8N7Q3 588 aa16.9■□□□□ 0.3
VPS53-216ENST00000574029 PLEKHA1Q9HB21 404 aa16.9■□□□□ 0.3
VPS53-216ENST00000574029 ZAR1LA6NP61 321 aa16.89■□□□□ 0.29
VPS53-216ENST00000574029 SYT7O43581 403 aa16.89■□□□□ 0.29
VPS53-216ENST00000574029 RPP14O95059 124 aaKnown RBP16.89■□□□□ 0.29
VPS53-216ENST00000574029 KRT8P05787 483 aa16.89■□□□□ 0.29
VPS53-216ENST00000574029 EDDM3AQ14507 147 aa16.89■□□□□ 0.29
VPS53-216ENST00000574029 ODF4Q2M2E3 257 aa16.89■□□□□ 0.29
VPS53-216ENST00000574029 C12orf73Q69YU5 71 aa16.89■□□□□ 0.29
VPS53-216ENST00000574029 SLC25A26Q70HW3 274 aa16.89■□□□□ 0.29
VPS53-216ENST00000574029 OR5AU1Q8NGC0 362 aa16.89■□□□□ 0.29
VPS53-216ENST00000574029 OR52N4Q8NGI2 321 aa16.89■□□□□ 0.29
VPS53-216ENST00000574029 NDNFQ8TB73 568 aa16.89■□□□□ 0.29
VPS53-216ENST00000574029 CIB1Q99828 191 aa16.89■□□□□ 0.29
VPS53-216ENST00000574029 CHST5Q9GZS9 411 aa16.89■□□□□ 0.29
VPS53-216ENST00000574029 TMEM133Q9H2Q1 129 aa16.89■□□□□ 0.29
VPS53-216ENST00000574029 SAC3D1A6NKF1 404 aa16.88■□□□□ 0.29
VPS53-216ENST00000574029 GATBO75879 557 aaKnown RBP16.88■□□□□ 0.29
VPS53-216ENST00000574029 HAND1O96004 215 aa16.88■□□□□ 0.29
VPS53-216ENST00000574029 IGHA1P01876 353 aa16.88■□□□□ 0.29
VPS53-216ENST00000574029 CD33P20138 364 aa16.88■□□□□ 0.29
VPS53-216ENST00000574029 PEX2P28328 305 aa16.88■□□□□ 0.29
VPS53-216ENST00000574029 EPHA2P29317 976 aa16.88■□□□□ 0.29
VPS53-216ENST00000574029 GRK1Q15835 563 aa16.88■□□□□ 0.29
VPS53-216ENST00000574029 ZBTB49Q6ZSB9 765 aa16.88■□□□□ 0.29
VPS53-216ENST00000574029 GID4Q8IVV7 300 aa16.88■□□□□ 0.29
VPS53-216ENST00000574029 ENTHD1Q8IYW4 607 aa16.88■□□□□ 0.29
VPS53-216ENST00000574029 TPRX1Q8N7U7 411 aa16.88■□□□□ 0.29
VPS53-216ENST00000574029 YIPF7Q8N8F6 280 aa16.88■□□□□ 0.29
VPS53-216ENST00000574029 CCDC54Q8NEL0 328 aa16.88■□□□□ 0.29
VPS53-216ENST00000574029 EMG1Q92979 244 aaKnown RBP16.88■□□□□ 0.29
VPS53-216ENST00000574029 CLEC7AQ9BXN2 247 aa16.88■□□□□ 0.29
VPS53-216ENST00000574029 GABARAPL3Q9BY60 117 aa16.88■□□□□ 0.29
VPS53-216ENST00000574029 NOTCH3Q9UM47 2321 aa16.87■□□□□ 0.29
VPS53-216ENST00000574029 H3BSH0 61 aa16.87■□□□□ 0.29
VPS53-216ENST00000574029 H3BUI4 141 aa16.87■□□□□ 0.29
VPS53-216ENST00000574029 PSPNO60542 156 aa16.87■□□□□ 0.29
VPS53-216ENST00000574029 INMTO95050 263 aa16.87■□□□□ 0.29
VPS53-216ENST00000574029 ALPLP05186 524 aa16.87■□□□□ 0.29
VPS53-216ENST00000574029 IGLL1P15814 213 aa16.87■□□□□ 0.29
VPS53-216ENST00000574029 ZNF91Q05481 1191 aa16.87■□□□□ 0.29
VPS53-216ENST00000574029 ZSCAN26Q16670 478 aa16.87■□□□□ 0.29
VPS53-216ENST00000574029 C16orf82Q7Z2V1 217 aa16.87■□□□□ 0.29
VPS53-216ENST00000574029 Q8IYB0 196 aa16.87■□□□□ 0.29
VPS53-216ENST00000574029 OR4P4Q8NGL7 312 aa16.87■□□□□ 0.29
VPS53-216ENST00000574029 BORCS8Q96FH0 119 aa16.87■□□□□ 0.29
VPS53-216ENST00000574029 IL4I1Q96RQ9 567 aa16.87■□□□□ 0.29
VPS53-216ENST00000574029 CHST6Q9GZX3 395 aa16.87■□□□□ 0.29
VPS53-216ENST00000574029 IL36RNQ9UBH0 155 aa16.87■□□□□ 0.29
VPS53-216ENST00000574029 A0A1W2PRX2 142 aa16.86■□□□□ 0.29
VPS53-216ENST00000574029 MMP23AO75900 390 aa16.86■□□□□ 0.29
VPS53-216ENST00000574029 GABRR1P24046 479 aa16.86■□□□□ 0.29
VPS53-216ENST00000574029 HTR1DP28221 377 aa16.86■□□□□ 0.29
VPS53-216ENST00000574029 ERP29P30040 261 aaKnown RBP16.86■□□□□ 0.29
VPS53-216ENST00000574029 IL18R1Q13478 541 aa16.86■□□□□ 0.29
VPS53-216ENST00000574029 TCTEX1D4Q5JR98 221 aa16.86■□□□□ 0.29
VPS53-216ENST00000574029 PQLC1Q8N2U9 271 aa16.86■□□□□ 0.29
VPS53-216ENST00000574029 C10orf35Q96D05 121 aa16.86■□□□□ 0.29
VPS53-216ENST00000574029 TBX5Q99593 518 aa16.86■□□□□ 0.29
VPS53-216ENST00000574029 LIN7BQ9HAP6 207 aa16.86■□□□□ 0.29
VPS53-216ENST00000574029 WARS2Q9UGM6 360 aaKnown RBP16.86■□□□□ 0.29
VPS53-216ENST00000574029 UBE2J1Q9Y385 318 aaPredicted RBP16.86■□□□□ 0.29
VPS53-216ENST00000574029 A0A1W2PQL4 384 aaPredicted RBP16.85■□□□□ 0.29
VPS53-216ENST00000574029 METTL15A6NJ78 407 aa16.85■□□□□ 0.29
VPS53-216ENST00000574029 MGST3O14880 152 aa16.85■□□□□ 0.29
VPS53-216ENST00000574029 SULT1C4O75897 302 aa16.85■□□□□ 0.29
VPS53-216ENST00000574029 SERPINA3P01011 423 aa16.85■□□□□ 0.29
VPS53-216ENST00000574029 OR2T7P0C7T2 308 aa16.85■□□□□ 0.29
VPS53-216ENST00000574029 POLR2IP36954 125 aaKnown RBP16.85■□□□□ 0.29
VPS53-216ENST00000574029 NPBWR2P48146 333 aa16.85■□□□□ 0.29
VPS53-216ENST00000574029 ZNF146Q15072 292 aa16.85■□□□□ 0.29
VPS53-216ENST00000574029 FAM58AQ8N1B3 248 aa16.85■□□□□ 0.29
VPS53-216ENST00000574029 DNAAF1Q8NEP3 725 aa16.85■□□□□ 0.29
VPS53-216ENST00000574029 ADI1Q9BV57 179 aa16.85■□□□□ 0.29
VPS53-216ENST00000574029 RBFOX1Q9NWB1 397 aaKnown RBP16.85■□□□□ 0.29
VPS53-216ENST00000574029 DNAH3Q8TD57 4116 aa16.85■□□□□ 0.29
VPS53-216ENST00000574029 TRBV2A0A0J9YWF9 115 aa16.84■□□□□ 0.29
VPS53-216ENST00000574029 PF4V1P10720 104 aa16.84■□□□□ 0.29
VPS53-216ENST00000574029 DUSP1P28562 367 aa16.84■□□□□ 0.29
VPS53-216ENST00000574029 OR3A1P47881 315 aa16.84■□□□□ 0.29
VPS53-216ENST00000574029 ALDH3A2P51648 485 aa16.84■□□□□ 0.29
VPS53-216ENST00000574029 P2RX3P56373 397 aa16.84■□□□□ 0.29
VPS53-216ENST00000574029 CENPVQ7Z7K6 275 aaPredicted RBP16.84■□□□□ 0.29
VPS53-216ENST00000574029 PRSS35Q8N3Z0 413 aa16.84■□□□□ 0.29
VPS53-216ENST00000574029 PP6455Q8WZ26 134 aa16.84■□□□□ 0.29
VPS53-216ENST00000574029 AKR1E2Q96JD6 320 aa16.84■□□□□ 0.29
VPS53-216ENST00000574029 C9orf16Q9BUW7 83 aa16.84■□□□□ 0.29
VPS53-216ENST00000574029 DPM3Q9P2X0 92 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms