RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 SELENOVP59797 346 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 RPS23P62266 143 aaKnown RBP7.62□□□□□ -1.19
VPS39-207ENST00000563692 NAAAQ02083 359 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 FAM27E3Q08E93 113 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 IL24Q13007 206 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 ZMYND11Q15326 602 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 RBMS2Q15434 407 aaKnown RBP7.62□□□□□ -1.19
VPS39-207ENST00000563692 TESK1Q15569 626 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 CARTPTQ16568 116 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 TAF9Q16594 264 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 RNASE10Q5GAN6 216 aaKnown RBP7.62□□□□□ -1.19
VPS39-207ENST00000563692 MBNL2Q5VZF2 373 aaKnown RBP7.62□□□□□ -1.19
VPS39-207ENST00000563692 ALKBH2Q6NS38 261 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 LINC00596Q86U02 117 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 MYPOPQ86VE0 399 aaPredicted RBP7.62□□□□□ -1.19
VPS39-207ENST00000563692 GLCCI1Q86VQ1 547 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 TMEM17Q86X19 198 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 MED12LQ86YW9 2145 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 CALHM1Q8IU99 346 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 Q8IYB0 196 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 FBXL14Q8N1E6 418 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 OR8G5Q8NG78 346 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 OR4C16Q8NGL9 310 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 OR4K15Q8NH41 348 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 DACT3Q96B18 629 aaPredicted RBP7.62□□□□□ -1.19
VPS39-207ENST00000563692 MED30Q96HR3 178 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 PRRT1Q99946 306 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 C20orf85Q9H1P6 137 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 GPN1Q9HCN4 374 aaPredicted RBP7.62□□□□□ -1.19
VPS39-207ENST00000563692 NGBQ9NPG2 151 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 PURGQ9UJV8 347 aaKnown RBP7.62□□□□□ -1.19
VPS39-207ENST00000563692 POLDIP2Q9Y2S7 368 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 KCNK7Q9Y2U2 307 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 ALG5Q9Y673 324 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 ABCA4P78363 2273 aa7.62□□□□□ -1.19
VPS39-207ENST00000563692 DCHS2Q6V1P9 2916 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 IGKV1-12A0A0C4DH73 117 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 LRP5LA4QPB2 252 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 PEX14O75381 377 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 IGKV1D-12P01611 117 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 AMY2AP04746 511 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 SFTPBP07988 381 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 NAT1P18440 290 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 FUT3P21217 361 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 MPZP25189 248 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 GLRXP35754 106 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 OR3A3P47888 321 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 FABP6P51161 128 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 TAS2R46P59540 309 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 FGF12P61328 243 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 MPV17LQ2QL34 196 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 C11orf91Q3C1V1 193 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 FAM76BQ5HYJ3 339 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 TMEM255AQ5JRV8 349 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 NHLRC3Q5JS37 347 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 NKAPLQ5M9Q1 402 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 METTL11BQ5VVY1 283 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 RGS7BPQ6MZT1 257 aaPredicted RBP7.61□□□□□ -1.19
VPS39-207ENST00000563692 HAGHLQ6PII5 290 aaPredicted RBP7.61□□□□□ -1.19
VPS39-207ENST00000563692 TMEM108Q6UXF1 575 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 HOGA1Q86XE5 327 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 BPIFB2Q8N4F0 458 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 OR51S1Q8NGJ8 323 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 OR13G1Q8NGZ3 307 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 CCDC107Q8WV48 283 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 NUDCD2Q8WVJ2 157 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 HPSE2Q8WWQ2 592 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 ST8SIA4Q92187 359 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 DVL3Q92997 716 aaPredicted RBP7.61□□□□□ -1.19
VPS39-207ENST00000563692 SLAMF9Q96A28 289 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 WFIKKN1Q96NZ8 548 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 SCGB3A2Q96PL1 93 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 GINS4Q9BRT9 223 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 ADAT1Q9BUB4 502 aaKnown RBP7.61□□□□□ -1.19
VPS39-207ENST00000563692 ST6GALNAC5Q9BVH7 336 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 CHST6Q9GZX3 395 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 MED28Q9H204 178 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 CXXC4Q9H2H0 198 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 OR51I2Q9H344 312 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 SPACA1Q9HBV2 294 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 ING3Q9NXR8 418 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 ELF5Q9UKW6 265 aaPredicted RBP7.61□□□□□ -1.19
VPS39-207ENST00000563692 CSMD2Q7Z408 3487 aa7.61□□□□□ -1.19
VPS39-207ENST00000563692 FREM1Q5H8C1 2179 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 A0A0A6YYJ9 748 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 J3QT63 122 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 GEMIN2O14893 280 aaKnown RBP7.6□□□□□ -1.19
VPS39-207ENST00000563692 ARPC1BO15143 372 aaKnown RBP7.6□□□□□ -1.19
VPS39-207ENST00000563692 SSX5O60225 188 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 PDCD6O75340 191 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 IL5P05113 134 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 GLAP06280 429 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 FCER2P06734 321 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 ACAA1P09110 424 aaPredicted RBP7.6□□□□□ -1.19
VPS39-207ENST00000563692 AMY2BP19961 511 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 BCL3P20749 454 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 PTAFRP25105 342 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 CALCRP30988 508 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 RBM11P57052 281 aaKnown RBP7.6□□□□□ -1.19
VPS39-207ENST00000563692 ERVS71-1P61550 626 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms