RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 CENPVQ7Z7K6 275 aaPredicted RBP13.09□□□□□ -0.31
CLN3-208ENST00000561505 RTN4RL2Q86UN3 420 aa13.09□□□□□ -0.31
CLN3-208ENST00000561505 CATSPERDQ86XM0 798 aa13.09□□□□□ -0.31
CLN3-208ENST00000561505 EGFL6Q8IUX8 553 aa13.09□□□□□ -0.31
CLN3-208ENST00000561505 SLC35F2Q8IXU6 374 aa13.09□□□□□ -0.31
CLN3-208ENST00000561505 Q8IYB0 196 aa13.09□□□□□ -0.31
CLN3-208ENST00000561505 ENTHD1Q8IYW4 607 aa13.09□□□□□ -0.31
CLN3-208ENST00000561505 LINC00482Q8N8I6 264 aa13.09□□□□□ -0.31
CLN3-208ENST00000561505 DNAAF1Q8NEP3 725 aa13.09□□□□□ -0.31
CLN3-208ENST00000561505 AKR1E2Q96JD6 320 aa13.09□□□□□ -0.31
CLN3-208ENST00000561505 RBM14Q96PK6 669 aaKnown RBP13.09□□□□□ -0.31
CLN3-208ENST00000561505 TTTY10Q9BZA0 68 aa13.09□□□□□ -0.31
CLN3-208ENST00000561505 TCRBV4S1A1TA0A5B7 111 aa13.08□□□□□ -0.32
CLN3-208ENST00000561505 LY6LH3BQJ8 138 aa13.08□□□□□ -0.32
CLN3-208ENST00000561505 MGST3O14880 152 aa13.08□□□□□ -0.32
CLN3-208ENST00000561505 OR2F2O95006 317 aa13.08□□□□□ -0.32
CLN3-208ENST00000561505 HAND1O96004 215 aa13.08□□□□□ -0.32
CLN3-208ENST00000561505 IGHA1P01876 353 aa13.08□□□□□ -0.32
CLN3-208ENST00000561505 PF4V1P10720 104 aa13.08□□□□□ -0.32
CLN3-208ENST00000561505 LMO1P25800 156 aa13.08□□□□□ -0.32
CLN3-208ENST00000561505 DAPP51397 102 aa13.08□□□□□ -0.32
CLN3-208ENST00000561505 SLX4IPQ5VYV7 408 aa13.08□□□□□ -0.32
CLN3-208ENST00000561505 OR52W1Q6IF63 320 aa13.08□□□□□ -0.32
CLN3-208ENST00000561505 BCDIN3DQ7Z5W3 292 aaKnown RBP13.08□□□□□ -0.32
CLN3-208ENST00000561505 NDNFQ8TB73 568 aa13.08□□□□□ -0.32
CLN3-208ENST00000561505 RNF166Q96A37 237 aaPredicted RBP13.08□□□□□ -0.32
CLN3-208ENST00000561505 IL36RNQ9UBH0 155 aa13.08□□□□□ -0.32
CLN3-208ENST00000561505 A0A087X0M5 115 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 TRBV2A0A0J9YWF9 115 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 A0A1B0GX30 115 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 FAM230AA0A1W2PPH8 454 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 A0A1W2PRX2 142 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 TCRBV3S1A0A5B6 114 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 FAM90A18PA6NE21 464 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 FAM90A16PA6NEW6 464 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 FAM90A20PA6NIJ5 464 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 FAM90A9PA6NNJ1 464 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 FAM90A12PA8MX19 464 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 FAM90A5PA8MXJ8 464 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 ZNF670-ZNF695F2Z2N8 137 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 ENTPD6O75354 484 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 FAM90A15PP0C7V4 464 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 FAM90A13PP0C7W8 464 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 FAM90A14PP0C7W9 464 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 FAM90A24PP0C7X0 464 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 BRS3P32247 399 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 OR3A1P47881 315 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 P2RX3P56373 397 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 CDC42P60953 191 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 GRK1Q15835 563 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 ARSJQ5FYB0 599 aaPredicted RBP13.07□□□□□ -0.32
CLN3-208ENST00000561505 SPIN3Q5JUX0 258 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 C10orf99Q6UWK7 81 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 ETV3LQ6ZN32 361 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 PLEKHG7Q6ZR37 379 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 CCDC121Q6ZUS5 278 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 SLC25A26Q70HW3 274 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 SSX6Q7RTT6 188 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 ABHD12Q8N2K0 398 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 TPRX1Q8N7U7 411 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 TRMT10AQ8TBZ6 339 aaKnown RBP13.07□□□□□ -0.32
CLN3-208ENST00000561505 ZNF596Q8TC21 504 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 TMEM163Q8TC26 289 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 UTP4Q969X6 686 aaKnown RBP13.07□□□□□ -0.32
CLN3-208ENST00000561505 SLAMF9Q96A28 289 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 CCDC124Q96CT7 223 aaKnown RBP13.07□□□□□ -0.32
CLN3-208ENST00000561505 B9D2Q9BPU9 175 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 PAPOLBQ9NRJ5 636 aaKnown RBP13.07□□□□□ -0.32
CLN3-208ENST00000561505 TAS2R3Q9NYW6 316 aa13.07□□□□□ -0.32
CLN3-208ENST00000561505 FKBP6O75344 327 aa13.06□□□□□ -0.32
CLN3-208ENST00000561505 GATBO75879 557 aaKnown RBP13.06□□□□□ -0.32
CLN3-208ENST00000561505 SULT1C4O75897 302 aa13.06□□□□□ -0.32
CLN3-208ENST00000561505 PF4P02776 101 aa13.06□□□□□ -0.32
CLN3-208ENST00000561505 NPBWR2P48146 333 aa13.06□□□□□ -0.32
CLN3-208ENST00000561505 ISL1P61371 349 aa13.06□□□□□ -0.32
CLN3-208ENST00000561505 GNGT1P63211 74 aa13.06□□□□□ -0.32
CLN3-208ENST00000561505 C12orf73Q69YU5 71 aa13.06□□□□□ -0.32
CLN3-208ENST00000561505 FAM58AQ8N1B3 248 aa13.06□□□□□ -0.32
CLN3-208ENST00000561505 PP6455Q8WZ26 134 aa13.06□□□□□ -0.32
CLN3-208ENST00000561505 SLC25A33Q9BSK2 321 aa13.06□□□□□ -0.32
CLN3-208ENST00000561505 GPR61Q9BZJ8 451 aa13.06□□□□□ -0.32
CLN3-208ENST00000561505 GTF2A1LQ9UNN4 478 aa13.06□□□□□ -0.32
CLN3-208ENST00000561505 IGKV1-9A0A0C4DH69 117 aa13.05□□□□□ -0.32
CLN3-208ENST00000561505 ZAR1LA6NP61 321 aa13.05□□□□□ -0.32
CLN3-208ENST00000561505 LEUTXA8MZ59 168 aa13.05□□□□□ -0.32
CLN3-208ENST00000561505 OOSP1A8MZH6 123 aa13.05□□□□□ -0.32
CLN3-208ENST00000561505 M0QZK8 103 aa13.05□□□□□ -0.32
CLN3-208ENST00000561505 SYT7O43581 403 aa13.05□□□□□ -0.32
CLN3-208ENST00000561505 CSN2P05814 226 aa13.05□□□□□ -0.32
CLN3-208ENST00000561505 LPLP06858 475 aa13.05□□□□□ -0.32
CLN3-208ENST00000561505 EPHA2P29317 976 aa13.05□□□□□ -0.32
CLN3-208ENST00000561505 CBX1P83916 185 aa13.05□□□□□ -0.32
CLN3-208ENST00000561505 EDDM3AQ14507 147 aa13.05□□□□□ -0.32
CLN3-208ENST00000561505 ABCA11PQ4W5N1 156 aa13.05□□□□□ -0.32
CLN3-208ENST00000561505 BAIAP2L2Q6UXY1 529 aa13.05□□□□□ -0.32
CLN3-208ENST00000561505 UTS2BQ765I0 119 aa13.05□□□□□ -0.32
CLN3-208ENST00000561505 THNSL2Q86YJ6 484 aa13.05□□□□□ -0.32
CLN3-208ENST00000561505 MRPL41Q8IXM3 137 aaKnown RBP13.05□□□□□ -0.32
CLN3-208ENST00000561505 OSR2Q8N2R0 312 aa13.05□□□□□ -0.32
CLN3-208ENST00000561505 TCEANCQ8N8B7 351 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms