RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 RNASEH2CQ8TDP1 164 aaKnown RBP0.92□□□□□ -2.26
USP3-209ENST00000558925 RTN4IP1Q8WWV3 396 aaPredicted RBP0.92□□□□□ -2.26
USP3-209ENST00000558925 GTF2H4Q92759 462 aa0.92□□□□□ -2.26
USP3-209ENST00000558925 CCDC124Q96CT7 223 aaKnown RBP0.92□□□□□ -2.26
USP3-209ENST00000558925 ZBED3Q96IU2 234 aaPredicted RBP0.92□□□□□ -2.26
USP3-209ENST00000558925 PGLYRP3Q96LB9 341 aa0.92□□□□□ -2.26
USP3-209ENST00000558925 RILPQ96NA2 401 aa0.92□□□□□ -2.26
USP3-209ENST00000558925 IP6K3Q96PC2 410 aa0.92□□□□□ -2.26
USP3-209ENST00000558925 OR2A7Q96R45 310 aa0.92□□□□□ -2.26
USP3-209ENST00000558925 CYTH2Q99418 400 aa0.92□□□□□ -2.26
USP3-209ENST00000558925 ZNF2Q9BSG1 426 aaPredicted RBP0.92□□□□□ -2.26
USP3-209ENST00000558925 MRPL20Q9BYC9 149 aaKnown RBP0.92□□□□□ -2.26
USP3-209ENST00000558925 UPF3BQ9BZI7 483 aaKnown RBP0.92□□□□□ -2.26
USP3-209ENST00000558925 NXF2Q9GZY0 626 aaKnown RBP0.92□□□□□ -2.26
USP3-209ENST00000558925 MFSD1Q9H3U5 465 aa0.92□□□□□ -2.26
USP3-209ENST00000558925 ABCB9Q9NP78 766 aa0.92□□□□□ -2.26
USP3-209ENST00000558925 DAZ1Q9NQZ3 744 aaKnown RBP0.92□□□□□ -2.26
USP3-209ENST00000558925 CYTL1Q9NRR1 136 aa0.92□□□□□ -2.26
USP3-209ENST00000558925 TMEM38BQ9NVV0 291 aa0.92□□□□□ -2.26
USP3-209ENST00000558925 DHCR7Q9UBM7 475 aaKnown RBP0.92□□□□□ -2.26
USP3-209ENST00000558925 INSIG2Q9Y5U4 225 aa0.92□□□□□ -2.26
USP3-209ENST00000558925 URGCP-MRPS24S4R325 110 aa0.92□□□□□ -2.26
USP3-209ENST00000558925 RPRD2Q5VT52 1461 aaKnown RBP0.92□□□□□ -2.26
USP3-209ENST00000558925 YLPM1P49750 1951 aaKnown RBP0.91□□□□□ -2.26
USP3-209ENST00000558925 IGLV3-12A0A075B6K2 115 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 A0A1B0GX12 115 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 ERICH2A1L162 156 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 MKRN2OSH3BPM6 223 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 SULT1C2O00338 296 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 ISLRO14498 428 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 BET1O15155 118 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 POLR3GO15318 223 aaPredicted RBP0.91□□□□□ -2.26
USP3-209ENST00000558925 GYG2O15488 501 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 MPZL2O60487 215 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 ADAP1O75689 374 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 SCO1O75880 301 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 MYO1DO94832 1006 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 CXorf1O96002 111 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 NRASP01111 189 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 HRASP01112 189 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 KRASP01116 189 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 CDK1P06493 297 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 OR4Q2P0C623 313 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 OR5AC1P0C628 307 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 ZNF14P17017 642 aaPredicted RBP0.91□□□□□ -2.26
USP3-209ENST00000558925 TSPOP30536 169 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 LGALS7P47929 136 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 GDI2P50395 445 aaKnown RBP0.91□□□□□ -2.26
USP3-209ENST00000558925 ERFP50548 548 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 PSMD7P51665 324 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 XKP51811 444 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 SLC18A1P54219 525 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 PLTPP55058 493 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 CD164Q04900 197 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 ATP5G2Q06055 141 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 PRDX1Q06830 199 aaKnown RBP0.91□□□□□ -2.26
USP3-209ENST00000558925 FUT5Q11128 374 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 TRDNQ13061 729 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 BTN1A1Q13410 526 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 RAB31Q13636 194 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 C16orf72Q14CZ0 275 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 ELOCQ15369 112 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 MAPRE2Q15555 327 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 SSX1Q16384 188 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 KRTAP13-2Q52LG2 175 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 CLLU1OSQ5K130 101 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 DNLZQ5SXM8 178 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 KHDRBS2Q5VWX1 349 aaKnown RBP0.91□□□□□ -2.26
USP3-209ENST00000558925 ERICH5Q6P6B1 374 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 PRSS54Q6PEW0 395 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 ZNF773Q6PK81 442 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 XKRXQ6PP77 449 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 UGT2A3Q6UWM9 527 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 PP632Q6XCG6 107 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 ADM2Q7Z4H4 148 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 HMGN2P46Q86SG4 172 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 LINC00596Q86U02 117 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 CYP4Z1Q86W10 505 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 RNF10Q8N5U6 811 aaKnown RBP0.91□□□□□ -2.26
USP3-209ENST00000558925 RNF182Q8N6D2 247 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 ZFP62Q8NB50 900 aaPredicted RBP0.91□□□□□ -2.26
USP3-209ENST00000558925 OR52N1Q8NH53 320 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 UBA3Q8TBC4 463 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 ORAOV1Q8WV07 137 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 ITLN2Q8WWU7 325 aaPredicted RBP0.91□□□□□ -2.26
USP3-209ENST00000558925 RBPMSQ93062 196 aaKnown RBP0.91□□□□□ -2.26
USP3-209ENST00000558925 CCDC127Q96BQ5 260 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 RMI2Q96E14 147 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 MRPL48Q96GC5 212 aaKnown RBP0.91□□□□□ -2.26
USP3-209ENST00000558925 LINC00477Q96M19 166 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 FAM210AQ96ND0 272 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 BIRC8Q96P09 236 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 RNF157Q96PX1 679 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 OR2M4Q96R27 311 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 TAPBPLQ9BX59 468 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 TSSK6Q9BXA6 273 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 RSPO3Q9BXY4 272 aaPredicted RBP0.91□□□□□ -2.26
USP3-209ENST00000558925 ZNF717Q9BY31 904 aaPredicted RBP0.91□□□□□ -2.26
USP3-209ENST00000558925 ANGPTL4Q9BY76 406 aa0.91□□□□□ -2.26
USP3-209ENST00000558925 PLA2G12AQ9BZM1 189 aa0.91□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms