RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 SLC25A26Q70HW3 274 aa18.82■□□□□ 0.6
CPSF1-202ENST00000527827 LIN7BQ9HAP6 207 aa18.82■□□□□ 0.6
CPSF1-202ENST00000527827 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP18.82■□□□□ 0.6
CPSF1-202ENST00000527827 INPP5EQ9NRR6 644 aa18.82■□□□□ 0.6
CPSF1-202ENST00000527827 DNAH9Q9NYC9 4486 aa18.82■□□□□ 0.6
CPSF1-202ENST00000527827 ZNF670-ZNF695F2Z2N8 137 aa18.81■□□□□ 0.6
CPSF1-202ENST00000527827 H3BUI4 141 aa18.81■□□□□ 0.6
CPSF1-202ENST00000527827 RPP14O95059 124 aaKnown RBP18.81■□□□□ 0.6
CPSF1-202ENST00000527827 HOXB6P17509 224 aaKnown RBP18.81■□□□□ 0.6
CPSF1-202ENST00000527827 PEX2P28328 305 aa18.81■□□□□ 0.6
CPSF1-202ENST00000527827 CBX1P83916 185 aa18.81■□□□□ 0.6
CPSF1-202ENST00000527827 EFNB1P98172 346 aa18.81■□□□□ 0.6
CPSF1-202ENST00000527827 ZNF91Q05481 1191 aa18.81■□□□□ 0.6
CPSF1-202ENST00000527827 IL18R1Q13478 541 aa18.81■□□□□ 0.6
CPSF1-202ENST00000527827 BAIAP2L2Q6UXY1 529 aa18.81■□□□□ 0.6
CPSF1-202ENST00000527827 ZBTB49Q6ZSB9 765 aa18.81■□□□□ 0.6
CPSF1-202ENST00000527827 SSX6Q7RTT6 188 aa18.81■□□□□ 0.6
CPSF1-202ENST00000527827 DNAJC9Q8WXX5 260 aa18.81■□□□□ 0.6
CPSF1-202ENST00000527827 EMG1Q92979 244 aaKnown RBP18.81■□□□□ 0.6
CPSF1-202ENST00000527827 PLEKHA1Q9HB21 404 aa18.81■□□□□ 0.6
CPSF1-202ENST00000527827 TENM3Q9P273 2699 aa18.81■□□□□ 0.6
CPSF1-202ENST00000527827 FKBP6O75344 327 aa18.8■□□□□ 0.6
CPSF1-202ENST00000527827 GABRR1P24046 479 aa18.8■□□□□ 0.6
CPSF1-202ENST00000527827 DAPP51397 102 aa18.8■□□□□ 0.6
CPSF1-202ENST00000527827 FUT6P51993 359 aa18.8■□□□□ 0.6
CPSF1-202ENST00000527827 DEFB121Q5J5C9 76 aa18.8■□□□□ 0.6
CPSF1-202ENST00000527827 SLX4IPQ5VYV7 408 aa18.8■□□□□ 0.6
CPSF1-202ENST00000527827 NXNL2Q5VZ03 156 aa18.8■□□□□ 0.6
CPSF1-202ENST00000527827 FAHD1Q6P587 224 aa18.8■□□□□ 0.6
CPSF1-202ENST00000527827 CATSPERDQ86XM0 798 aa18.8■□□□□ 0.6
CPSF1-202ENST00000527827 THTPAQ9BU02 230 aa18.8■□□□□ 0.6
CPSF1-202ENST00000527827 CHST5Q9GZS9 411 aa18.8■□□□□ 0.6
CPSF1-202ENST00000527827 DPM3Q9P2X0 92 aa18.8■□□□□ 0.6
CPSF1-202ENST00000527827 AMY1AP04745 511 aa18.79■□□□□ 0.6
CPSF1-202ENST00000527827 AMY2AP04746 511 aa18.79■□□□□ 0.6
CPSF1-202ENST00000527827 LPLP06858 475 aa18.79■□□□□ 0.6
CPSF1-202ENST00000527827 DUSP1P28562 367 aa18.79■□□□□ 0.6
CPSF1-202ENST00000527827 ABCA11PQ4W5N1 156 aa18.79■□□□□ 0.6
CPSF1-202ENST00000527827 ABHD12Q8N2K0 398 aa18.79■□□□□ 0.6
CPSF1-202ENST00000527827 TCEANCQ8N8B7 351 aa18.79■□□□□ 0.6
CPSF1-202ENST00000527827 YIPF7Q8N8F6 280 aa18.79■□□□□ 0.6
CPSF1-202ENST00000527827 AKR1E2Q96JD6 320 aa18.79■□□□□ 0.6
CPSF1-202ENST00000527827 SLC25A33Q9BSK2 321 aa18.79■□□□□ 0.6
CPSF1-202ENST00000527827 RBFOX1Q9NWB1 397 aaKnown RBP18.79■□□□□ 0.6
CPSF1-202ENST00000527827 ZKSCAN7Q9P0L1 754 aaPredicted RBP18.79■□□□□ 0.6
CPSF1-202ENST00000527827 H2AFY2Q9P0M6 372 aaPredicted RBP18.79■□□□□ 0.6
CPSF1-202ENST00000527827 SH2D7A6NKC9 451 aaPredicted RBP18.78■□□□□ 0.6
CPSF1-202ENST00000527827 MGST3O14880 152 aa18.78■□□□□ 0.6
CPSF1-202ENST00000527827 SYT7O43581 403 aa18.78■□□□□ 0.6
CPSF1-202ENST00000527827 GATBO75879 557 aaKnown RBP18.78■□□□□ 0.6
CPSF1-202ENST00000527827 DUS4LO95620 317 aaKnown RBP18.78■□□□□ 0.6
CPSF1-202ENST00000527827 OR3A1P47881 315 aa18.78■□□□□ 0.6
CPSF1-202ENST00000527827 NPBWR2P48146 333 aa18.78■□□□□ 0.6
CPSF1-202ENST00000527827 BDH1Q02338 343 aa18.78■□□□□ 0.6
CPSF1-202ENST00000527827 EGFEM1PQ0D2K5 195 aa18.78■□□□□ 0.6
CPSF1-202ENST00000527827 ENTHD1Q8IYW4 607 aa18.78■□□□□ 0.6
CPSF1-202ENST00000527827 OR4X2Q8NGF9 303 aa18.78■□□□□ 0.6
CPSF1-202ENST00000527827 TMEM163Q8TC26 289 aa18.78■□□□□ 0.6
CPSF1-202ENST00000527827 NRBF2Q96F24 287 aa18.78■□□□□ 0.6
CPSF1-202ENST00000527827 BORCS8Q96FH0 119 aa18.78■□□□□ 0.6
CPSF1-202ENST00000527827 UBE2J1Q9Y385 318 aaPredicted RBP18.78■□□□□ 0.6
CPSF1-202ENST00000527827 ENTPD6O75354 484 aa18.77■□□□□ 0.6
CPSF1-202ENST00000527827 OR2F2O95006 317 aa18.77■□□□□ 0.6
CPSF1-202ENST00000527827 KRT8P05787 483 aa18.77■□□□□ 0.6
CPSF1-202ENST00000527827 VSIG8P0DPA2 414 aa18.77■□□□□ 0.6
CPSF1-202ENST00000527827 CALCBP10092 127 aa18.77■□□□□ 0.6
CPSF1-202ENST00000527827 BCL3P20749 454 aa18.77■□□□□ 0.6
CPSF1-202ENST00000527827 EPHA2P29317 976 aa18.77■□□□□ 0.6
CPSF1-202ENST00000527827 ERP29P30040 261 aaKnown RBP18.77■□□□□ 0.6
CPSF1-202ENST00000527827 BRS3P32247 399 aa18.77■□□□□ 0.6
CPSF1-202ENST00000527827 P2RX3P56373 397 aa18.77■□□□□ 0.6
CPSF1-202ENST00000527827 PRAMEF5Q5TYX0 476 aa18.77■□□□□ 0.6
CPSF1-202ENST00000527827 TRAPPC6BQ86SZ2 158 aa18.77■□□□□ 0.6
CPSF1-202ENST00000527827 Q8IYB0 196 aa18.77■□□□□ 0.6
CPSF1-202ENST00000527827 FAM58AQ8N1B3 248 aa18.77■□□□□ 0.6
CPSF1-202ENST00000527827 STMN2Q93045 179 aa18.77■□□□□ 0.6
CPSF1-202ENST00000527827 RBM14Q96PK6 669 aaKnown RBP18.77■□□□□ 0.6
CPSF1-202ENST00000527827 TBX5Q99593 518 aa18.77■□□□□ 0.6
CPSF1-202ENST00000527827 PRRG3Q9BZD7 231 aa18.77■□□□□ 0.6
CPSF1-202ENST00000527827 HHLA2Q9UM44 414 aa18.77■□□□□ 0.6
CPSF1-202ENST00000527827 TRBV2A0A0J9YWF9 115 aa18.76■□□□□ 0.59
CPSF1-202ENST00000527827 IGLV1-47P01700 117 aa18.76■□□□□ 0.59
CPSF1-202ENST00000527827 HOXD3P31249 432 aaPredicted RBP18.76■□□□□ 0.59
CPSF1-202ENST00000527827 ZNF146Q15072 292 aa18.76■□□□□ 0.59
CPSF1-202ENST00000527827 RTN4RL2Q86UN3 420 aa18.76■□□□□ 0.59
CPSF1-202ENST00000527827 SPATA24Q86W54 205 aa18.76■□□□□ 0.59
CPSF1-202ENST00000527827 LINC00482Q8N8I6 264 aa18.76■□□□□ 0.59
CPSF1-202ENST00000527827 CAPSLQ8WWF8 208 aa18.76■□□□□ 0.59
CPSF1-202ENST00000527827 TCRBV3S1A0A5B6 114 aa18.75■□□□□ 0.59
CPSF1-202ENST00000527827 MITFO75030 526 aaPredicted RBP18.75■□□□□ 0.59
CPSF1-202ENST00000527827 GDNFP39905 211 aa18.75■□□□□ 0.59
CPSF1-202ENST00000527827 SNU13P55769 128 aaKnown RBP18.75■□□□□ 0.59
CPSF1-202ENST00000527827 KHDC1LQ5JSQ8 128 aa18.75■□□□□ 0.59
CPSF1-202ENST00000527827 C12orf73Q69YU5 71 aa18.75■□□□□ 0.59
CPSF1-202ENST00000527827 OR52W1Q6IF63 320 aa18.75■□□□□ 0.59
CPSF1-202ENST00000527827 HEPN1Q6WQI6 88 aa18.75■□□□□ 0.59
CPSF1-202ENST00000527827 CCDC54Q8NEL0 328 aa18.75■□□□□ 0.59
CPSF1-202ENST00000527827 ZNF596Q8TC21 504 aa18.75■□□□□ 0.59
CPSF1-202ENST00000527827 BCAS4Q8TDM0 211 aa18.75■□□□□ 0.59
CPSF1-202ENST00000527827 IL4I1Q96RQ9 567 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms