RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 TPPP2P59282 170 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 TXNDC8Q6A555 127 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 C9orf40Q8IXQ3 194 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 LGI3Q8N145 548 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 FBXL14Q8N1E6 418 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 STARD4Q96DR4 205 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 ABHD6Q9BV23 337 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 OR51I2Q9H344 312 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 ELL3Q9HB65 397 aaPredicted RBP10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 TBX21Q9UL17 535 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 ST3GAL6Q9Y274 331 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 EMC9Q9Y3B6 208 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 TMEM14AQ9Y6G1 99 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 ZNF840PA6NDX5 716 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 PDGFBP01127 241 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 HLA-HP01893 362 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 GABRA3P34903 492 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 SFTPDP35247 375 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 TRA2BP62995 288 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 PSG6Q00889 435 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 HYAL1Q12794 435 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 OR4A47Q6IF82 309 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 OR4D5Q8NGN0 318 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 OR5C1Q8NGR4 320 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 ZBP1Q9H171 429 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 ST6GALNAC1Q9NSC7 600 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 ADAM29Q9UKF5 820 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 HHLA2Q9UM44 414 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 SELENOKQ9Y6D0 94 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 TRAV30A0A087WSZ9 112 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 A0A1W2PP11 408 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 ODAMA1E959 279 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 YPEL1O60688 119 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 WDR1O75083 606 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 RAD51DO75771 328 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 CDS2O95674 445 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 HPNP05981 417 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 PLAC9Q5JTB6 97 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 PLD4Q96BZ4 506 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 YPEL2Q96QA6 119 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 HIPK2Q9H2X6 1198 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 SLC45A2Q9UMX9 530 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 COL4A3Q01955 1670 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 NPIPA2E9PIF3 369 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 HYPMO75409 117 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 HRASP01112 189 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 TCN2P20062 427 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 BMP5P22003 454 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 HSD11B1P28845 292 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 TLE3Q04726 772 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 SNAI3Q3KNW1 292 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 RSPO2Q6UXX9 243 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 ZNF764Q96H86 408 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 ZNF681Q96N22 645 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 MAGT1Q9H0U3 335 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 LRIT1Q9P2V4 623 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 CES1P1Q9UKY3 287 aa10.55□□□□□ -0.72
LIMCH1-213ENST00000511496 LRRC3CA6NJW4 275 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 P2RY10O00398 339 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 NXPH3O95157 252 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 BCL2P10415 239 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 GRK6P43250 576 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 BIDP55957 195 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 MRPS6P82932 125 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 ZNF117Q03924 483 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 ALG10Q5BKT4 473 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 ZNF787Q6DD87 383 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 ERN2Q76MJ5 926 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 RNF144BQ7Z419 303 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 OR5AU1Q8NGC0 362 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 TMEM171Q8WVE6 324 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 ARHGAP5-AS1Q96IT6 56 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 SLC5A6Q9Y289 635 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 LRP12Q9Y561 859 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 LOC107986453A0A1B0GWG9 222 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 DIRC3C9JPN6 131 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 M0R296 226 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 RAB29O14966 203 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 SAP30O75446 220 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 CT45A8P0DMV1 189 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 CT45A9P0DMV2 189 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 IGFBP3P17936 291 aaPredicted RBP10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 CSNK1G2P78368 415 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 CT45A2Q5DJT8 189 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 C1orf100Q5SVJ3 147 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 FAM78BQ5VT40 261 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 OR2C3Q8N628 320 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 NUP210LQ5VU65 1888 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 CLDN17P56750 224 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 POLR2LP62875 67 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 TESK1Q15569 626 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 FFAR4Q5NUL3 377 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 SLC8B1Q6J4K2 584 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 MEX3BQ6ZN04 569 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 ATOH7Q8N100 152 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 CISD2Q8N5K1 135 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 OR5D18Q8NGL1 313 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 OTOSQ8NHW6 89 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 TMEM56Q96MV1 263 aa10.54□□□□□ -0.72
LIMCH1-213ENST00000511496 TMEM56-RWDD3S4R434 201 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms