RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 FBXW5Q969U6 566 aa10.46□□□□□ -0.74
HDAC6-230ENST00000488543 APOBEC3DQ96AK3 386 aaPredicted RBP10.46□□□□□ -0.74
HDAC6-230ENST00000488543 NUDT16L1Q9BRJ7 211 aaKnown RBP10.46□□□□□ -0.74
HDAC6-230ENST00000488543 ZNF471Q9BX82 626 aaPredicted RBP10.46□□□□□ -0.74
HDAC6-230ENST00000488543 SCPEP1Q9HB40 452 aa10.46□□□□□ -0.74
HDAC6-230ENST00000488543 CRIM1Q9NZV1 1036 aa10.46□□□□□ -0.74
HDAC6-230ENST00000488543 PRELID1Q9Y255 219 aa10.46□□□□□ -0.74
HDAC6-230ENST00000488543 ZNF835Q9Y2P0 537 aa10.46□□□□□ -0.74
HDAC6-230ENST00000488543 STARD10Q9Y365 291 aa10.46□□□□□ -0.74
HDAC6-230ENST00000488543 ZFYVE26Q68DK2 2539 aa10.46□□□□□ -0.74
HDAC6-230ENST00000488543 CFAP46Q8IYW2 2715 aa10.45□□□□□ -0.74
HDAC6-230ENST00000488543 TUBAL3A6NHL2 446 aa10.45□□□□□ -0.74
HDAC6-230ENST00000488543 CNOT4O95628 575 aaKnown RBP10.45□□□□□ -0.74
HDAC6-230ENST00000488543 PLATP00750 562 aa10.45□□□□□ -0.74
HDAC6-230ENST00000488543 NRASP01111 189 aa10.45□□□□□ -0.74
HDAC6-230ENST00000488543 NGFP01138 241 aa10.45□□□□□ -0.74
HDAC6-230ENST00000488543 COX5AP20674 150 aa10.45□□□□□ -0.74
HDAC6-230ENST00000488543 TIMP3P35625 211 aa10.45□□□□□ -0.74
HDAC6-230ENST00000488543 SSBP1Q04837 148 aaKnown RBP10.45□□□□□ -0.74
HDAC6-230ENST00000488543 GABRA6Q16445 453 aa10.45□□□□□ -0.74
HDAC6-230ENST00000488543 OVCH2Q7RTZ1 564 aa10.45□□□□□ -0.74
HDAC6-230ENST00000488543 PNLDC1Q8NA58 520 aaKnown RBP10.45□□□□□ -0.74
HDAC6-230ENST00000488543 BHLHE23Q8NDY6 225 aa10.45□□□□□ -0.74
HDAC6-230ENST00000488543 OR10R2Q8NGX6 335 aa10.45□□□□□ -0.74
HDAC6-230ENST00000488543 NANOS1Q8WY41 292 aaKnown RBP10.45□□□□□ -0.74
HDAC6-230ENST00000488543 NARS2Q96I59 477 aaKnown RBP10.45□□□□□ -0.74
HDAC6-230ENST00000488543 SELENOIQ9C0D9 397 aa10.45□□□□□ -0.74
HDAC6-230ENST00000488543 GHRLQ9UBU3 117 aa10.45□□□□□ -0.74
HDAC6-230ENST00000488543 SHANK1Q9Y566 2161 aa10.45□□□□□ -0.74
HDAC6-230ENST00000488543 ZNF816-ZNF321PA0A0X1KG74 233 aa10.45□□□□□ -0.74
HDAC6-230ENST00000488543 RNF222A6NCQ9 220 aa10.45□□□□□ -0.74
HDAC6-230ENST00000488543 MELTFP08582 738 aa10.45□□□□□ -0.74
HDAC6-230ENST00000488543 CEACAM8P31997 349 aaPredicted RBP10.45□□□□□ -0.74
HDAC6-230ENST00000488543 PTGER4P35408 488 aa10.45□□□□□ -0.74
HDAC6-230ENST00000488543 CNN3Q15417 329 aaKnown RBP10.45□□□□□ -0.74
HDAC6-230ENST00000488543 RNASE10Q5GAN6 216 aaKnown RBP10.45□□□□□ -0.74
HDAC6-230ENST00000488543 SLC51BQ86UW2 128 aa10.45□□□□□ -0.74
HDAC6-230ENST00000488543 MYPOPQ86VE0 399 aaPredicted RBP10.45□□□□□ -0.74
HDAC6-230ENST00000488543 PXT1Q8NFP0 134 aa10.45□□□□□ -0.74
HDAC6-230ENST00000488543 CCDC107Q8WV48 283 aa10.45□□□□□ -0.74
HDAC6-230ENST00000488543 TMEM59Q9BXS4 323 aa10.45□□□□□ -0.74
HDAC6-230ENST00000488543 PROCRQ9UNN8 238 aa10.45□□□□□ -0.74
HDAC6-230ENST00000488543 KCNK7Q9Y2U2 307 aa10.45□□□□□ -0.74
HDAC6-230ENST00000488543 A0A0G2JNJ9 132 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 C13orf42A0A1B0GVH6 325 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 FAM74A7A6NL05 159 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 FOXI3A8MTJ6 420 aaPredicted RBP10.44□□□□□ -0.74
HDAC6-230ENST00000488543 SOCS1O15524 211 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 SSX5O60225 188 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 CRTAPO75718 401 aaPredicted RBP10.44□□□□□ -0.74
HDAC6-230ENST00000488543 SERPINA5P05154 406 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 ZNF14P17017 642 aaPredicted RBP10.44□□□□□ -0.74
HDAC6-230ENST00000488543 BMP5P22003 454 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 APLNRP35414 380 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 RPS27AP62979 156 aaKnown RBP10.44□□□□□ -0.74
HDAC6-230ENST00000488543 DEFA5Q01523 94 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 BAMBIQ13145 260 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 FAM74A3Q4VXF1 159 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 PLAC9Q5JTB6 97 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 ZNF474Q6S9Z5 364 aaPredicted RBP10.44□□□□□ -0.74
HDAC6-230ENST00000488543 CXorf67Q86X51 503 aaPredicted RBP10.44□□□□□ -0.74
HDAC6-230ENST00000488543 FAM89BQ8N5H3 189 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 OR56B2PQ8NGI1 322 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 MARCH1Q8TCQ1 289 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 MAFIPQ8WZ33 124 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 BOD1Q96IK1 185 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 Q9UFV3 132 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 FAM230AA0A1W2PPH8 454 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 SCGNO76038 276 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 CD74P04233 296 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 CHRM2P08172 466 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 CELA3BP08861 270 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 MTCP1P56278 107 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 TMEM50BP56557 158 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 ZNF273Q14593 569 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 MPPED2Q15777 294 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 MOB3CQ70IA8 216 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 ADAT1Q9BUB4 502 aaKnown RBP10.44□□□□□ -0.74
HDAC6-230ENST00000488543 FGF23Q9GZV9 251 aaPredicted RBP10.44□□□□□ -0.74
HDAC6-230ENST00000488543 MBD2Q9UBB5 411 aa10.44□□□□□ -0.74
HDAC6-230ENST00000488543 ZBTB25P24278 435 aa10.43□□□□□ -0.74
HDAC6-230ENST00000488543 CALCRP30988 508 aa10.43□□□□□ -0.74
HDAC6-230ENST00000488543 TGFBR3Q03167 851 aa10.43□□□□□ -0.74
HDAC6-230ENST00000488543 ASCL4Q6XD76 172 aa10.43□□□□□ -0.74
HDAC6-230ENST00000488543 C1orf122Q6ZSJ8 110 aa10.43□□□□□ -0.74
HDAC6-230ENST00000488543 LHFPL2Q6ZUX7 228 aa10.43□□□□□ -0.74
HDAC6-230ENST00000488543 WDR31Q8NA23 367 aa10.43□□□□□ -0.74
HDAC6-230ENST00000488543 SLC30A7Q8NEW0 376 aa10.43□□□□□ -0.74
HDAC6-230ENST00000488543 BPIFCQ8NFQ6 507 aa10.43□□□□□ -0.74
HDAC6-230ENST00000488543 PIGCQ92535 297 aa10.43□□□□□ -0.74
HDAC6-230ENST00000488543 CNTNAP3BQ96NU0 1288 aa10.43□□□□□ -0.74
HDAC6-230ENST00000488543 TM2D1Q9BX74 207 aa10.43□□□□□ -0.74
HDAC6-230ENST00000488543 CNTNAP3Q9BZ76 1288 aa10.43□□□□□ -0.74
HDAC6-230ENST00000488543 IFT46Q9NQC8 304 aa10.43□□□□□ -0.74
HDAC6-230ENST00000488543 TNFSF18Q9UNG2 199 aa10.43□□□□□ -0.74
HDAC6-230ENST00000488543 TRGV8A0A0C4DH27 118 aa10.43□□□□□ -0.74
HDAC6-230ENST00000488543 KANTRA0A1W2PQU2 76 aa10.43□□□□□ -0.74
HDAC6-230ENST00000488543 C9orf170A2RU37 121 aa10.43□□□□□ -0.74
HDAC6-230ENST00000488543 MPTX1A8MV57 137 aa10.43□□□□□ -0.74
HDAC6-230ENST00000488543 MGMTP16455 207 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms