RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 TRAV8-7A0A075B6U6 113 aa13.11□□□□□ -0.31
UPF3A-208ENST00000484246 PNMA8CA0A1B0GUJ8 204 aa13.11□□□□□ -0.31
UPF3A-208ENST00000484246 K7N7A8 449 aa13.11□□□□□ -0.31
UPF3A-208ENST00000484246 PIN1P1O15428 100 aa13.11□□□□□ -0.31
UPF3A-208ENST00000484246 ANGPTL7O43827 346 aa13.11□□□□□ -0.31
UPF3A-208ENST00000484246 CHRM2P08172 466 aa13.11□□□□□ -0.31
UPF3A-208ENST00000484246 MTNR1BP49286 362 aa13.11□□□□□ -0.31
UPF3A-208ENST00000484246 FGF12P61328 243 aa13.11□□□□□ -0.31
UPF3A-208ENST00000484246 ARMCX4Q5H9R4 360 aa13.11□□□□□ -0.31
UPF3A-208ENST00000484246 C9orf139Q6ZV77 190 aa13.11□□□□□ -0.31
UPF3A-208ENST00000484246 ZNF367Q7RTV3 350 aa13.11□□□□□ -0.31
UPF3A-208ENST00000484246 TMEM185AQ8NFB2 350 aa13.11□□□□□ -0.31
UPF3A-208ENST00000484246 OR5D18Q8NGL1 313 aa13.11□□□□□ -0.31
UPF3A-208ENST00000484246 WDFY2Q96P53 400 aa13.11□□□□□ -0.31
UPF3A-208ENST00000484246 IL36GQ9NZH8 169 aa13.11□□□□□ -0.31
UPF3A-208ENST00000484246 NUP50Q9UKX7 468 aa13.11□□□□□ -0.31
UPF3A-208ENST00000484246 JMJD1CQ15652 2540 aa13.1□□□□□ -0.31
UPF3A-208ENST00000484246 A0A0A6YYJ9 748 aa13.1□□□□□ -0.31
UPF3A-208ENST00000484246 HAND1O96004 215 aa13.1□□□□□ -0.31
UPF3A-208ENST00000484246 TK1P04183 234 aa13.1□□□□□ -0.31
UPF3A-208ENST00000484246 SFTPBP07988 381 aa13.1□□□□□ -0.31
UPF3A-208ENST00000484246 CPEP16870 476 aa13.1□□□□□ -0.31
UPF3A-208ENST00000484246 PSMA1P25786 263 aaKnown RBP13.1□□□□□ -0.31
UPF3A-208ENST00000484246 CEBPDP49716 269 aaPredicted RBP13.1□□□□□ -0.31
UPF3A-208ENST00000484246 BPIFB3P59826 476 aa13.1□□□□□ -0.31
UPF3A-208ENST00000484246 TRAM1Q15629 374 aa13.1□□□□□ -0.31
UPF3A-208ENST00000484246 DDI2Q5TDH0 399 aa13.1□□□□□ -0.31
UPF3A-208ENST00000484246 METAP1DQ6UB28 335 aaPredicted RBP13.1□□□□□ -0.31
UPF3A-208ENST00000484246 C1orf122Q6ZSJ8 110 aa13.1□□□□□ -0.31
UPF3A-208ENST00000484246 USP43Q70EL4 1123 aa13.1□□□□□ -0.31
UPF3A-208ENST00000484246 LYPD6Q86Y78 171 aa13.1□□□□□ -0.31
UPF3A-208ENST00000484246 BATF2Q8N1L9 274 aa13.1□□□□□ -0.31
UPF3A-208ENST00000484246 NKAIN3Q8N8D7 197 aa13.1□□□□□ -0.31
UPF3A-208ENST00000484246 TBX15Q96SF7 602 aa13.1□□□□□ -0.31
UPF3A-208ENST00000484246 CCDC90BQ9GZT6 254 aa13.1□□□□□ -0.31
UPF3A-208ENST00000484246 UNKLQ9H9P5 680 aaKnown RBP13.1□□□□□ -0.31
UPF3A-208ENST00000484246 ACOT13Q9NPJ3 140 aa13.1□□□□□ -0.31
UPF3A-208ENST00000484246 IL36RNQ9UBH0 155 aa13.1□□□□□ -0.31
UPF3A-208ENST00000484246 M0R1W7 72 aa13.09□□□□□ -0.31
UPF3A-208ENST00000484246 TMEM225BP0DP42 221 aa13.09□□□□□ -0.31
UPF3A-208ENST00000484246 NDUFB7P17568 137 aa13.09□□□□□ -0.31
UPF3A-208ENST00000484246 PRKACAP17612 351 aa13.09□□□□□ -0.31
UPF3A-208ENST00000484246 EEF1B2P24534 225 aaKnown RBP13.09□□□□□ -0.31
UPF3A-208ENST00000484246 LMO1P25800 156 aa13.09□□□□□ -0.31
UPF3A-208ENST00000484246 ZNF93P35789 620 aaPredicted RBP13.09□□□□□ -0.31
UPF3A-208ENST00000484246 TGFBR2P37173 567 aa13.09□□□□□ -0.31
UPF3A-208ENST00000484246 PTGFRP43088 359 aa13.09□□□□□ -0.31
UPF3A-208ENST00000484246 COL10A1Q03692 680 aa13.09□□□□□ -0.31
UPF3A-208ENST00000484246 PDCD1Q15116 288 aa13.09□□□□□ -0.31
UPF3A-208ENST00000484246 NHLRC3Q5JS37 347 aa13.09□□□□□ -0.31
UPF3A-208ENST00000484246 METTL11BQ5VVY1 283 aa13.09□□□□□ -0.31
UPF3A-208ENST00000484246 OR8H2Q8N162 312 aa13.09□□□□□ -0.31
UPF3A-208ENST00000484246 SVOPQ8N4V2 548 aa13.09□□□□□ -0.31
UPF3A-208ENST00000484246 TBC1D15Q8TC07 691 aa13.09□□□□□ -0.31
UPF3A-208ENST00000484246 TNFAIP8L1Q8WVP5 186 aa13.09□□□□□ -0.31
UPF3A-208ENST00000484246 PHYHIPQ92561 330 aa13.09□□□□□ -0.31
UPF3A-208ENST00000484246 SNX22Q96L94 193 aa13.09□□□□□ -0.31
UPF3A-208ENST00000484246 MGLLQ99685 303 aa13.09□□□□□ -0.31
UPF3A-208ENST00000484246 NOX4Q9NPH5 578 aa13.09□□□□□ -0.31
UPF3A-208ENST00000484246 OR14J1Q9UGF5 321 aa13.09□□□□□ -0.31
UPF3A-208ENST00000484246 GLS2Q9UI32 602 aa13.09□□□□□ -0.31
UPF3A-208ENST00000484246 TRAV40A0A0B4J280 105 aa13.08□□□□□ -0.32
UPF3A-208ENST00000484246 TMEM82A0PJX8 343 aa13.08□□□□□ -0.32
UPF3A-208ENST00000484246 MEGF11A6BM72 1044 aa13.08□□□□□ -0.32
UPF3A-208ENST00000484246 MAGEA13PA6NCF6 341 aa13.08□□□□□ -0.32
UPF3A-208ENST00000484246 TOX4O94842 621 aa13.08□□□□□ -0.32
UPF3A-208ENST00000484246 UCHL1P09936 223 aa13.08□□□□□ -0.32
UPF3A-208ENST00000484246 MAP2K4P45985 399 aa13.08□□□□□ -0.32
UPF3A-208ENST00000484246 IL13RA2Q14627 380 aa13.08□□□□□ -0.32
UPF3A-208ENST00000484246 ACSM3Q53FZ2 586 aa13.08□□□□□ -0.32
UPF3A-208ENST00000484246 LIPKQ5VXJ0 399 aa13.08□□□□□ -0.32
UPF3A-208ENST00000484246 C17orf107Q6ZR85 190 aa13.08□□□□□ -0.32
UPF3A-208ENST00000484246 PHC2Q8IXK0 858 aa13.08□□□□□ -0.32
UPF3A-208ENST00000484246 CMTM4Q8IZR5 234 aa13.08□□□□□ -0.32
UPF3A-208ENST00000484246 CHST4Q8NCG5 386 aa13.08□□□□□ -0.32
UPF3A-208ENST00000484246 OR51T1Q8NGJ9 327 aa13.08□□□□□ -0.32
UPF3A-208ENST00000484246 H1FXQ92522 213 aaKnown RBP13.08□□□□□ -0.32
UPF3A-208ENST00000484246 ORAI1Q96D31 301 aa13.08□□□□□ -0.32
UPF3A-208ENST00000484246 GPER1Q99527 375 aa13.08□□□□□ -0.32
UPF3A-208ENST00000484246 TMED9Q9BVK6 235 aa13.08□□□□□ -0.32
UPF3A-208ENST00000484246 ELL3Q9HB65 397 aaPredicted RBP13.08□□□□□ -0.32
UPF3A-208ENST00000484246 SF3B6Q9Y3B4 125 aaKnown RBP13.08□□□□□ -0.32
UPF3A-208ENST00000484246 ZNF780AO75290 641 aaPredicted RBP13.07□□□□□ -0.32
UPF3A-208ENST00000484246 CSN2P05814 226 aa13.07□□□□□ -0.32
UPF3A-208ENST00000484246 IGHV4-38-2P0DP08 117 aa13.07□□□□□ -0.32
UPF3A-208ENST00000484246 FPR2P25090 351 aa13.07□□□□□ -0.32
UPF3A-208ENST00000484246 GABRA5P31644 462 aa13.07□□□□□ -0.32
UPF3A-208ENST00000484246 OR3A4PP47883 348 aa13.07□□□□□ -0.32
UPF3A-208ENST00000484246 CAPZA1P52907 286 aa13.07□□□□□ -0.32
UPF3A-208ENST00000484246 GP2P55259 537 aaKnown RBP13.07□□□□□ -0.32
UPF3A-208ENST00000484246 RPL31P62899 125 aaKnown RBP13.07□□□□□ -0.32
UPF3A-208ENST00000484246 EMX1Q04741 257 aaPredicted RBP13.07□□□□□ -0.32
UPF3A-208ENST00000484246 KCTD21Q4G0X4 260 aa13.07□□□□□ -0.32
UPF3A-208ENST00000484246 UBE2UQ5VVX9 321 aa13.07□□□□□ -0.32
UPF3A-208ENST00000484246 ASCC1Q8N9N2 400 aaKnown RBP13.07□□□□□ -0.32
UPF3A-208ENST00000484246 OR5D13Q8NGL4 314 aa13.07□□□□□ -0.32
UPF3A-208ENST00000484246 PPP1R35Q8TAP8 253 aa13.07□□□□□ -0.32
UPF3A-208ENST00000484246 FCGR1BQ92637 280 aa13.07□□□□□ -0.32
UPF3A-208ENST00000484246 UQCC2Q9BRT2 126 aa13.07□□□□□ -0.32
UPF3A-208ENST00000484246 SUCNR1Q9BXA5 334 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms