RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 SNRPFP62306 86 aaKnown RBP4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 RHOBP62745 196 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 RHEBQ15382 184 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 SYPL1Q16563 259 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 RPEL1Q2QD12 228 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 FAM162BQ5T6X4 162 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 WDR74Q6RFH5 385 aaPredicted RBP4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 LINC00336Q6ZUF6 198 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 FA2HQ7L5A8 372 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 WDR53Q7Z5U6 358 aaPredicted RBP4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 TMPRSS12Q86WS5 348 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 LRRC25Q8N386 305 aaPredicted RBP4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 GBGT1Q8N5D6 347 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 TCTEX1D1Q8N7M0 179 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 POC1AQ8NBT0 407 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 DUSP18Q8NEJ0 188 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 OR4K1Q8NGD4 311 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 OR4A4PQ8NGN8 299 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 GPR148Q8TDV2 347 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 ZNF488Q96MN9 340 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 TSSK2Q96PF2 358 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 RASL10BQ96S79 203 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 TIMP4Q99727 224 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 NKX3-1Q99801 234 aaPredicted RBP4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 AGPAT1Q99943 283 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 PSMG3Q9BT73 122 aaPredicted RBP4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 EFCAB11Q9BUY7 163 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 SEC11CQ9BY50 192 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 SELENOIQ9C0D9 397 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 DMAC2Q9NW81 257 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 MRPL27Q9P0M9 148 aaKnown RBP4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 B4GALT7Q9UBV7 327 aa4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 ZNF629Q9UEG4 869 aaPredicted RBP4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 PCYT1BQ9Y5K3 369 aaPredicted RBP4.14□□□□□ -1.75
CCDC88A-209ENST00000456975 A0A087X0K7 114 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 TRBV4-1A0A0J9YWV2 114 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 A0A0J9YY10 115 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 KIR2DS1A0A191URI9 304 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 A0A1B0GU03 582 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 SMIM28A0A1B0GU29 152 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 EXOC1LA0A1B0GW35 172 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 A0A1B0GX78 115 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 RNF222A6NCQ9 220 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 DCTN6O00399 190 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 MSTNO14793 375 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 CTSDP07339 412 aaPredicted RBP4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 OR5G3P0C626 314 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 SLC2A2P11168 524 aaPredicted RBP4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 PSG1P11464 419 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 FABP4P15090 132 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 HIST1H1TP22492 207 aaPredicted RBP4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 GLRXP35754 106 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 MDH2P40926 338 aaKnown RBP4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 TNFSF9P41273 254 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 IER3P46695 156 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 HIST1H1AQ02539 215 aaPredicted RBP4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 ZNF154Q13106 437 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 PNOCQ13519 176 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 KIR2DS1Q14954 304 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 MS4A18Q3C1V0 323 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 AWAT1Q58HT5 328 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 RNASE12Q5GAN4 147 aaKnown RBP4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 TMEM69Q5SWH9 247 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 TMEM244Q5VVB8 128 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 GGNBP1Q5YKI7 109 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 EIF5AL1Q6IS14 154 aaKnown RBP4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 AADACL2Q6P093 401 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 DET1Q7L5Y6 550 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 P2RY8Q86VZ1 359 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 APRG1Q8IVJ8 170 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 OSR2Q8N2R0 312 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 SLC35G3Q8N808 338 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 LINC01356Q8N9X3 169 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 OR4K5Q8NGD3 323 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 OR6T1Q8NGN1 323 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 ZNF519Q8TB69 540 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 OR8D1Q8WZ84 308 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 FGGYQ96C11 551 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 SCRN2Q96FV2 425 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 BTF3L4Q96K17 158 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 DNAJC30Q96LL9 226 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 ZNF300Q96RE9 604 aaPredicted RBP4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 FAIM2Q9BWQ8 316 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 MARCH5Q9NX47 278 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 NAT8Q9UHE5 227 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 TRAPPC2LQ9UL33 140 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 LAMTOR2Q9Y2Q5 125 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 TMED3Q9Y3Q3 217 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 ZFHX4Q86UP3 3567 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 CEP250Q9BV73 2442 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 PKD1L2Q7Z442 2459 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 DNAH14Q0VDD8 3507 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 ASPDHA6ND91 283 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 SLC22A20A6NK97 555 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 OR5B21A6NL26 309 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 FOXI3A8MTJ6 420 aaPredicted RBP4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 C2CD4DB7Z1M9 353 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 NPIPB6E9PJ23 425 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 HCRTR1O43613 425 aa4.13□□□□□ -1.75
CCDC88A-209ENST00000456975 PRAF2O60831 178 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms