RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 GAL3ST1Q99999 423 aa10.9□□□□□ -0.66
VPS33A-202ENST00000451053 ELL3Q9HB65 397 aaPredicted RBP10.9□□□□□ -0.66
VPS33A-202ENST00000451053 RABL2AQ9UBK7 228 aaPredicted RBP10.9□□□□□ -0.66
VPS33A-202ENST00000451053 RAB22AQ9UL26 194 aa10.9□□□□□ -0.66
VPS33A-202ENST00000451053 RABL2BQ9UNT1 228 aa10.9□□□□□ -0.66
VPS33A-202ENST00000451053 MYO9AB2RTY4 2548 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 A0A0B4J203 849 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 TMEM272A0A1B0GTI8 110 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 METTL21EPA6NDL7 271 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 CEACAM18A8MTB9 384 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 FAM25AB3EWG3 89 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 FAM25CB3EWG5 89 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 FAM25GB3EWG6 89 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 TRAPPC2LH3BP13 241 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 NXPH2O95156 264 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 CSTBP04080 98 aaKnown RBP10.89□□□□□ -0.67
VPS33A-202ENST00000451053 ACAA1P09110 424 aaPredicted RBP10.89□□□□□ -0.67
VPS33A-202ENST00000451053 BCL3P20749 454 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 NPBWR2P48146 333 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 LMO4P61968 165 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 LYPD2Q6UXB3 125 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 BAIAP2L2Q6UXY1 529 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 LAX1Q8IWV1 398 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 Q8IYB0 196 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 MUC20Q8N307 709 aaPredicted RBP10.89□□□□□ -0.67
VPS33A-202ENST00000451053 OR5T2Q8NGG2 359 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 OR5H6Q8NGV6 325 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 PHF21AQ96BD5 680 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 MRPS24Q96EL2 167 aaKnown RBP10.89□□□□□ -0.67
VPS33A-202ENST00000451053 S100A16Q96FQ6 103 aaKnown RBP10.89□□□□□ -0.67
VPS33A-202ENST00000451053 DIRAS2Q96HU8 199 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 COX4I2Q96KJ9 171 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 URM1Q9BTM9 101 aaKnown RBP10.89□□□□□ -0.67
VPS33A-202ENST00000451053 ABCG5Q9H222 651 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 HES4Q9HCC6 221 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 HMG20AQ9NP66 347 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 RBFOX1Q9NWB1 397 aaKnown RBP10.89□□□□□ -0.67
VPS33A-202ENST00000451053 RHBDL2Q9NX52 303 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 NLKQ9UBE8 527 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 DNAJB11Q9UBS4 358 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 CR1P17927 2039 aa10.89□□□□□ -0.67
VPS33A-202ENST00000451053 A0A0A6YYH2 397 aa10.88□□□□□ -0.67
VPS33A-202ENST00000451053 TRAV38-1A0A0B4J264 116 aa10.88□□□□□ -0.67
VPS33A-202ENST00000451053 A6NJ64 397 aa10.88□□□□□ -0.67
VPS33A-202ENST00000451053 TMEM14DPA8MWL7 114 aa10.88□□□□□ -0.67
VPS33A-202ENST00000451053 TNFRSF13BO14836 293 aaPredicted RBP10.88□□□□□ -0.67
VPS33A-202ENST00000451053 LDLRAD4O15165 306 aa10.88□□□□□ -0.67
VPS33A-202ENST00000451053 CRTAPO75718 401 aaPredicted RBP10.88□□□□□ -0.67
VPS33A-202ENST00000451053 IGHV2-5P01817 119 aa10.88□□□□□ -0.67
VPS33A-202ENST00000451053 GYPAP02724 150 aa10.88□□□□□ -0.67
VPS33A-202ENST00000451053 VSIG8P0DPA2 414 aa10.88□□□□□ -0.67
VPS33A-202ENST00000451053 GTF2F2P13984 249 aa10.88□□□□□ -0.67
VPS33A-202ENST00000451053 MUC1P15941 1255 aaPredicted RBP10.88□□□□□ -0.67
VPS33A-202ENST00000451053 TNFSF8P32971 234 aa10.88□□□□□ -0.67
VPS33A-202ENST00000451053 ZNF45Q02386 682 aa10.88□□□□□ -0.67
VPS33A-202ENST00000451053 MICBQ29980 383 aa10.88□□□□□ -0.67
VPS33A-202ENST00000451053 SMIM21Q3B7S5 101 aa10.88□□□□□ -0.67
VPS33A-202ENST00000451053 SLC22A6Q4U2R8 563 aa10.88□□□□□ -0.67
VPS33A-202ENST00000451053 STUMQ69YW2 141 aa10.88□□□□□ -0.67
VPS33A-202ENST00000451053 RAB12Q6IQ22 244 aa10.88□□□□□ -0.67
VPS33A-202ENST00000451053 METAP1DQ6UB28 335 aaPredicted RBP10.88□□□□□ -0.67
VPS33A-202ENST00000451053 DCDC5Q6ZRR9 648 aa10.88□□□□□ -0.67
VPS33A-202ENST00000451053 SPICQ8N5J4 248 aa10.88□□□□□ -0.67
VPS33A-202ENST00000451053 POM121Q96HA1 1249 aa10.88□□□□□ -0.67
VPS33A-202ENST00000451053 C1orf147Q96MC9 270 aaPredicted RBP10.88□□□□□ -0.67
VPS33A-202ENST00000451053 TMEM59Q9BXS4 323 aa10.88□□□□□ -0.67
VPS33A-202ENST00000451053 WDR12Q9GZL7 423 aaKnown RBP10.88□□□□□ -0.67
VPS33A-202ENST00000451053 MIXL1Q9H2W2 232 aa10.88□□□□□ -0.67
VPS33A-202ENST00000451053 ZNF665Q9H7R5 613 aa10.88□□□□□ -0.67
VPS33A-202ENST00000451053 RASL12Q9NYN1 266 aa10.88□□□□□ -0.67
VPS33A-202ENST00000451053 IL36RNQ9UBH0 155 aa10.88□□□□□ -0.67
VPS33A-202ENST00000451053 IGKV1D-17A0A075B6S4 117 aa10.87□□□□□ -0.67
VPS33A-202ENST00000451053 A0A1B0GW55 424 aa10.87□□□□□ -0.67
VPS33A-202ENST00000451053 OR2AT4A6NND4 320 aa10.87□□□□□ -0.67
VPS33A-202ENST00000451053 F5H0A9 414 aaPredicted RBP10.87□□□□□ -0.67
VPS33A-202ENST00000451053 H3BUI4 141 aa10.87□□□□□ -0.67
VPS33A-202ENST00000451053 TPPPO94811 219 aa10.87□□□□□ -0.67
VPS33A-202ENST00000451053 HTR3BO95264 441 aa10.87□□□□□ -0.67
VPS33A-202ENST00000451053 EIF4EP06730 217 aaKnown RBP10.87□□□□□ -0.67
VPS33A-202ENST00000451053 SFTPBP07988 381 aa10.87□□□□□ -0.67
VPS33A-202ENST00000451053 DUX4L2P0CJ85 424 aa10.87□□□□□ -0.67
VPS33A-202ENST00000451053 DUX4L3P0CJ86 424 aa10.87□□□□□ -0.67
VPS33A-202ENST00000451053 DUX4L4P0CJ87 422 aa10.87□□□□□ -0.67
VPS33A-202ENST00000451053 DUX4L5P0CJ88 424 aa10.87□□□□□ -0.67
VPS33A-202ENST00000451053 DUX4L6P0CJ89 424 aa10.87□□□□□ -0.67
VPS33A-202ENST00000451053 DUX4L7P0CJ90 424 aa10.87□□□□□ -0.67
VPS33A-202ENST00000451053 PSG2P11465 335 aa10.87□□□□□ -0.67
VPS33A-202ENST00000451053 ELK1P19419 428 aa10.87□□□□□ -0.67
VPS33A-202ENST00000451053 AMY2BP19961 511 aa10.87□□□□□ -0.67
VPS33A-202ENST00000451053 SERPINA2P20848 420 aa10.87□□□□□ -0.67
VPS33A-202ENST00000451053 PTBP1P26599 531 aaKnown RBP eCLIP10.87□□□□□ -0.67
VPS33A-202ENST00000451053 ETV6P41212 452 aa10.87□□□□□ -0.67
VPS33A-202ENST00000451053 CEBPDP49716 269 aaPredicted RBP10.87□□□□□ -0.67
VPS33A-202ENST00000451053 SEC61A1P61619 476 aaKnown RBP10.87□□□□□ -0.67
VPS33A-202ENST00000451053 QRFPP83859 136 aa10.87□□□□□ -0.67
VPS33A-202ENST00000451053 ZNF846Q147U1 533 aa10.87□□□□□ -0.67
VPS33A-202ENST00000451053 ELP2Q6IA86 826 aa10.87□□□□□ -0.67
VPS33A-202ENST00000451053 CNIH2Q6PI25 160 aa10.87□□□□□ -0.67
VPS33A-202ENST00000451053 DUX4L9Q6RFH8 374 aaPredicted RBP10.87□□□□□ -0.67
VPS33A-202ENST00000451053 CCDC190Q86UF4 302 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms