RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 METTL11BQ5VVY1 283 aa17.92■□□□□ 0.46
CLN3-207ENST00000395653 UFD1Q92890 307 aa17.92■□□□□ 0.46
CLN3-207ENST00000395653 WDFY2Q96P53 400 aa17.92■□□□□ 0.46
CLN3-207ENST00000395653 YTHDF1Q9BYJ9 559 aaKnown RBP17.92■□□□□ 0.46
CLN3-207ENST00000395653 SIRPDQ9H106 197 aa17.92■□□□□ 0.46
CLN3-207ENST00000395653 IL36RNQ9UBH0 155 aa17.92■□□□□ 0.46
CLN3-207ENST00000395653 FOXJ3Q9UPW0 622 aa17.92■□□□□ 0.46
CLN3-207ENST00000395653 KPTNQ9Y664 436 aa17.92■□□□□ 0.46
CLN3-207ENST00000395653 MRPS14O60783 128 aaKnown RBP17.91■□□□□ 0.46
CLN3-207ENST00000395653 TOX4O94842 621 aa17.91■□□□□ 0.46
CLN3-207ENST00000395653 HAND1O96004 215 aa17.91■□□□□ 0.46
CLN3-207ENST00000395653 TK1P04183 234 aa17.91■□□□□ 0.46
CLN3-207ENST00000395653 TGFBR2P37173 567 aa17.91■□□□□ 0.46
CLN3-207ENST00000395653 ARF6P62330 175 aa17.91■□□□□ 0.46
CLN3-207ENST00000395653 TPBGQ13641 420 aa17.91■□□□□ 0.46
CLN3-207ENST00000395653 SATL1Q86VE3 508 aa17.91■□□□□ 0.46
CLN3-207ENST00000395653 KIR3DL3Q8N743 410 aa17.91■□□□□ 0.46
CLN3-207ENST00000395653 TNFAIP8L1Q8WVP5 186 aa17.91■□□□□ 0.46
CLN3-207ENST00000395653 ELL3Q9HB65 397 aaPredicted RBP17.91■□□□□ 0.46
CLN3-207ENST00000395653 ATRQ13535 2644 aa17.91■□□□□ 0.46
CLN3-207ENST00000395653 TRAV8-7A0A075B6U6 113 aa17.9■□□□□ 0.46
CLN3-207ENST00000395653 TRAV40A0A0B4J280 105 aa17.9■□□□□ 0.46
CLN3-207ENST00000395653 A0A1W2PPK0 400 aa17.9■□□□□ 0.46
CLN3-207ENST00000395653 K7N7A8 449 aa17.9■□□□□ 0.46
CLN3-207ENST00000395653 PIN1P1O15428 100 aa17.9■□□□□ 0.46
CLN3-207ENST00000395653 ZNF737O75373 536 aa17.9■□□□□ 0.46
CLN3-207ENST00000395653 HSMCR30P0CW71 290 aa17.9■□□□□ 0.46
CLN3-207ENST00000395653 ZNF93P35789 620 aaPredicted RBP17.9■□□□□ 0.46
CLN3-207ENST00000395653 MAP2K4P45985 399 aa17.9■□□□□ 0.46
CLN3-207ENST00000395653 BMXP51813 675 aa17.9■□□□□ 0.46
CLN3-207ENST00000395653 UNQ9370/PRO34162Q6UXP9 181 aa17.9■□□□□ 0.46
CLN3-207ENST00000395653 ASCL4Q6XD76 172 aa17.9■□□□□ 0.46
CLN3-207ENST00000395653 CMTM4Q8IZR5 234 aa17.9■□□□□ 0.46
CLN3-207ENST00000395653 ASCC1Q8N9N2 400 aaKnown RBP17.9■□□□□ 0.46
CLN3-207ENST00000395653 TBX15Q96SF7 602 aa17.9■□□□□ 0.46
CLN3-207ENST00000395653 PCGF1Q9BSM1 259 aa17.9■□□□□ 0.46
CLN3-207ENST00000395653 TMED9Q9BVK6 235 aa17.9■□□□□ 0.46
CLN3-207ENST00000395653 GLS2Q9UI32 602 aa17.9■□□□□ 0.46
CLN3-207ENST00000395653 IGHV4-38-2P0DP08 117 aa17.89■□□□□ 0.46
CLN3-207ENST00000395653 FPR2P25090 351 aa17.89■□□□□ 0.46
CLN3-207ENST00000395653 MTNR1BP49286 362 aa17.89■□□□□ 0.46
CLN3-207ENST00000395653 ACSM3Q53FZ2 586 aa17.89■□□□□ 0.46
CLN3-207ENST00000395653 LIPKQ5VXJ0 399 aa17.89■□□□□ 0.46
CLN3-207ENST00000395653 ELP2Q6IA86 826 aa17.89■□□□□ 0.46
CLN3-207ENST00000395653 MGLLQ99685 303 aa17.89■□□□□ 0.46
CLN3-207ENST00000395653 FAM192AQ9GZU8 254 aa17.89■□□□□ 0.46
CLN3-207ENST00000395653 OCEL1Q9H607 264 aa17.89■□□□□ 0.46
CLN3-207ENST00000395653 NOX4Q9NPH5 578 aa17.89■□□□□ 0.46
CLN3-207ENST00000395653 ONECUT1Q9UBC0 465 aa17.89■□□□□ 0.46
CLN3-207ENST00000395653 GSTK1Q9Y2Q3 226 aa17.89■□□□□ 0.46
CLN3-207ENST00000395653 A0A1W2PQ09 198 aa17.89■□□□□ 0.45
CLN3-207ENST00000395653 SC5DO75845 299 aa17.89■□□□□ 0.45
CLN3-207ENST00000395653 CALCBP10092 127 aa17.89■□□□□ 0.45
CLN3-207ENST00000395653 PTGFRP43088 359 aa17.89■□□□□ 0.45
CLN3-207ENST00000395653 ZNF367Q7RTV3 350 aa17.89■□□□□ 0.45
CLN3-207ENST00000395653 CDH26Q8IXH8 852 aa17.89■□□□□ 0.45
CLN3-207ENST00000395653 BPIFB2Q8N4F0 458 aa17.89■□□□□ 0.45
CLN3-207ENST00000395653 SNX22Q96L94 193 aa17.89■□□□□ 0.45
CLN3-207ENST00000395653 EXOSC4Q9NPD3 245 aaKnown RBP17.89■□□□□ 0.45
CLN3-207ENST00000395653 ACOT13Q9NPJ3 140 aa17.89■□□□□ 0.45
CLN3-207ENST00000395653 MAGEA13PA6NCF6 341 aa17.88■□□□□ 0.45
CLN3-207ENST00000395653 TCF21O43680 179 aa17.88■□□□□ 0.45
CLN3-207ENST00000395653 CPEP16870 476 aa17.88■□□□□ 0.45
CLN3-207ENST00000395653 DUSP1P28562 367 aa17.88■□□□□ 0.45
CLN3-207ENST00000395653 OR3A4PP47883 348 aa17.88■□□□□ 0.45
CLN3-207ENST00000395653 SNU13P55769 128 aaKnown RBP17.88■□□□□ 0.45
CLN3-207ENST00000395653 INSL4Q14641 139 aa17.88■□□□□ 0.45
CLN3-207ENST00000395653 PDCD1Q15116 288 aa17.88■□□□□ 0.45
CLN3-207ENST00000395653 TRAM1Q15629 374 aa17.88■□□□□ 0.45
CLN3-207ENST00000395653 GPR157Q5UAW9 335 aa17.88■□□□□ 0.45
CLN3-207ENST00000395653 C17orf107Q6ZR85 190 aa17.88■□□□□ 0.45
CLN3-207ENST00000395653 C1orf122Q6ZSJ8 110 aa17.88■□□□□ 0.45
CLN3-207ENST00000395653 OR8H2Q8N162 312 aa17.88■□□□□ 0.45
CLN3-207ENST00000395653 Q8NFD4 153 aa17.88■□□□□ 0.45
CLN3-207ENST00000395653 OR5D13Q8NGL4 314 aa17.88■□□□□ 0.45
CLN3-207ENST00000395653 TBC1D15Q8TC07 691 aa17.88■□□□□ 0.45
CLN3-207ENST00000395653 ZNF418Q8TF45 676 aaPredicted RBP17.88■□□□□ 0.45
CLN3-207ENST00000395653 ZNF69Q9UC07 566 aa17.88■□□□□ 0.45
CLN3-207ENST00000395653 A0A0A6YYJ9 748 aa17.87■□□□□ 0.45
CLN3-207ENST00000395653 TMEM82A0PJX8 343 aa17.87■□□□□ 0.45
CLN3-207ENST00000395653 M0R1W7 72 aa17.87■□□□□ 0.45
CLN3-207ENST00000395653 SH2D1BO14796 132 aa17.87■□□□□ 0.45
CLN3-207ENST00000395653 PSMA1P25786 263 aaKnown RBP17.87■□□□□ 0.45
CLN3-207ENST00000395653 BPIFB3P59826 476 aa17.87■□□□□ 0.45
CLN3-207ENST00000395653 RPL31P62899 125 aaKnown RBP17.87■□□□□ 0.45
CLN3-207ENST00000395653 EMX1Q04741 257 aaPredicted RBP17.87■□□□□ 0.45
CLN3-207ENST00000395653 RSU1Q15404 277 aa17.87■□□□□ 0.45
CLN3-207ENST00000395653 TUSC1Q2TAM9 212 aa17.87■□□□□ 0.45
CLN3-207ENST00000395653 C9orf139Q6ZV77 190 aa17.87■□□□□ 0.45
CLN3-207ENST00000395653 USP43Q70EL4 1123 aa17.87■□□□□ 0.45
CLN3-207ENST00000395653 FAM185AQ8N0U4 392 aa17.87■□□□□ 0.45
CLN3-207ENST00000395653 SVOPQ8N4V2 548 aa17.87■□□□□ 0.45
CLN3-207ENST00000395653 NKAIN3Q8N8D7 197 aa17.87■□□□□ 0.45
CLN3-207ENST00000395653 NKX3-1Q99801 234 aaPredicted RBP17.87■□□□□ 0.45
CLN3-207ENST00000395653 C19orf12Q9NSK7 152 aa17.87■□□□□ 0.45
CLN3-207ENST00000395653 IL36GQ9NZH8 169 aa17.87■□□□□ 0.45
CLN3-207ENST00000395653 IGHV3OR16-10A0A075B7F0 116 aa17.86■□□□□ 0.45
CLN3-207ENST00000395653 MAS1P04201 325 aa17.86■□□□□ 0.45
CLN3-207ENST00000395653 LMO1P25800 156 aa17.86■□□□□ 0.45
CLN3-207ENST00000395653 GDPD3Q7L5L3 318 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms