RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 NUFIP2Q7Z417 695 aaKnown RBP9.51□□□□□ -0.89
CD44-201ENST00000263398 FAM24BQ8N5W8 94 aa9.51□□□□□ -0.89
CD44-201ENST00000263398 RFESDQ8TAC1 157 aa9.51□□□□□ -0.89
CD44-201ENST00000263398 ST6GALNAC2Q9UJ37 374 aa9.51□□□□□ -0.89
CD44-201ENST00000263398 PCDHGA9Q9Y5G4 932 aaKnown RBP9.51□□□□□ -0.89
CD44-201ENST00000263398 XKRY2A2RUG3 117 aa9.51□□□□□ -0.89
CD44-201ENST00000263398 SPINT1O43278 529 aa9.51□□□□□ -0.89
CD44-201ENST00000263398 MLF1P58340 268 aa9.51□□□□□ -0.89
CD44-201ENST00000263398 CLEC9AQ6UXN8 241 aa9.51□□□□□ -0.89
CD44-201ENST00000263398 C17orf78Q8N4C9 275 aa9.51□□□□□ -0.89
CD44-201ENST00000263398 TMEM104Q8NE00 496 aa9.51□□□□□ -0.89
CD44-201ENST00000263398 OR2Y1Q8NGV0 311 aa9.51□□□□□ -0.89
CD44-201ENST00000263398 PTPMT1Q8WUK0 201 aaPredicted RBP9.51□□□□□ -0.89
CD44-201ENST00000263398 FBLIM1Q8WUP2 373 aa9.51□□□□□ -0.89
CD44-201ENST00000263398 TRMT61AQ96FX7 289 aaKnown RBP9.51□□□□□ -0.89
CD44-201ENST00000263398 UCK1Q9HA47 277 aa9.51□□□□□ -0.89
CD44-201ENST00000263398 LINC00862A6NCI5 91 aa9.51□□□□□ -0.89
CD44-201ENST00000263398 BGLAPP02818 100 aa9.51□□□□□ -0.89
CD44-201ENST00000263398 CD1AP06126 327 aa9.51□□□□□ -0.89
CD44-201ENST00000263398 IL24Q13007 206 aa9.51□□□□□ -0.89
CD44-201ENST00000263398 TMEM241Q24JQ0 296 aa9.51□□□□□ -0.89
CD44-201ENST00000263398 ZNF766Q5HY98 468 aa9.51□□□□□ -0.89
CD44-201ENST00000263398 PLAC9Q5JTB6 97 aa9.51□□□□□ -0.89
CD44-201ENST00000263398 TRAT1Q6PIZ9 186 aa9.51□□□□□ -0.89
CD44-201ENST00000263398 SLC36A1Q7Z2H8 476 aa9.51□□□□□ -0.89
CD44-201ENST00000263398 OR2Z1Q8NG97 314 aa9.51□□□□□ -0.89
CD44-201ENST00000263398 NDFIP1Q9BT67 221 aa9.51□□□□□ -0.89
CD44-201ENST00000263398 MFRPQ9BY79 579 aa9.51□□□□□ -0.89
CD44-201ENST00000263398 ALX4Q9H161 411 aaPredicted RBP9.51□□□□□ -0.89
CD44-201ENST00000263398 HSBP1O75506 76 aa9.5□□□□□ -0.89
CD44-201ENST00000263398 RD3LP0DJH9 198 aa9.5□□□□□ -0.89
CD44-201ENST00000263398 ZNF250P15622 560 aa9.5□□□□□ -0.89
CD44-201ENST00000263398 VDAC1P21796 283 aa9.5□□□□□ -0.89
CD44-201ENST00000263398 PEBP1P30086 187 aaKnown RBP9.5□□□□□ -0.89
CD44-201ENST00000263398 CALCRP30988 508 aa9.5□□□□□ -0.89
CD44-201ENST00000263398 TMEM267Q0VDI3 215 aaPredicted RBP9.5□□□□□ -0.89
CD44-201ENST00000263398 MICBQ29980 383 aa9.5□□□□□ -0.89
CD44-201ENST00000263398 FFAR4Q5NUL3 377 aa9.5□□□□□ -0.89
CD44-201ENST00000263398 WDR74Q6RFH5 385 aaPredicted RBP9.5□□□□□ -0.89
CD44-201ENST00000263398 CXorf67Q86X51 503 aaPredicted RBP9.5□□□□□ -0.89
CD44-201ENST00000263398 TMEM52Q8NDY8 209 aa9.5□□□□□ -0.89
CD44-201ENST00000263398 PLPPR2Q96GM1 343 aa9.5□□□□□ -0.89
CD44-201ENST00000263398 LRRC3BQ96PB8 259 aa9.5□□□□□ -0.89
CD44-201ENST00000263398 IFT22Q9H7X7 185 aa9.5□□□□□ -0.89
CD44-201ENST00000263398 CENPVL1A0A0U1RR11 272 aa9.5□□□□□ -0.89
CD44-201ENST00000263398 SPRY3O43610 288 aa9.5□□□□□ -0.89
CD44-201ENST00000263398 CRYABP02511 175 aaKnown RBP9.5□□□□□ -0.89
CD44-201ENST00000263398 CSRP3P50461 194 aa9.5□□□□□ -0.89
CD44-201ENST00000263398 ERVFC1-1P60608 527 aa9.5□□□□□ -0.89
CD44-201ENST00000263398 POLR2GP62487 172 aaKnown RBP eCLIP9.5□□□□□ -0.89
CD44-201ENST00000263398 RPL11P62913 178 aaKnown RBP9.5□□□□□ -0.89
CD44-201ENST00000263398 SRSF5Q13243 272 aaKnown RBP9.5□□□□□ -0.89
CD44-201ENST00000263398 LIAT1Q6ZQX7 453 aa9.5□□□□□ -0.89
CD44-201ENST00000263398 ACY3Q96HD9 319 aa9.5□□□□□ -0.89
CD44-201ENST00000263398 PRSS27Q9BQR3 290 aa9.5□□□□□ -0.89
CD44-201ENST00000263398 HES4Q9HCC6 221 aa9.5□□□□□ -0.89
CD44-201ENST00000263398 ZNF835Q9Y2P0 537 aa9.5□□□□□ -0.89
CD44-201ENST00000263398 SIRT4Q9Y6E7 314 aaPredicted RBP9.5□□□□□ -0.89
CD44-201ENST00000263398 FOXS1O43638 330 aa9.5□□□□□ -0.89
CD44-201ENST00000263398 GCM2O75603 506 aaPredicted RBP9.5□□□□□ -0.89
CD44-201ENST00000263398 MT-CO3P00414 261 aa9.5□□□□□ -0.89
CD44-201ENST00000263398 VSIG8P0DPA2 414 aa9.5□□□□□ -0.89
CD44-201ENST00000263398 SNRPEP62304 92 aaKnown RBP9.5□□□□□ -0.89
CD44-201ENST00000263398 PRR27Q6MZM9 219 aa9.5□□□□□ -0.89
CD44-201ENST00000263398 SLC26A10Q8NG04 563 aa9.5□□□□□ -0.89
CD44-201ENST00000263398 TMEM37Q8WXS4 190 aa9.5□□□□□ -0.89
CD44-201ENST00000263398 LINC00052Q96N35 136 aa9.5□□□□□ -0.89
CD44-201ENST00000263398 FCGR3BO75015 233 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 MEOX1P50221 254 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 MOGAT2Q3SYC2 334 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 VMA21Q3ZAQ7 101 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 KLHDC1Q8N7A1 406 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 UBAC2Q8NBM4 344 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 TMEM56Q96MV1 263 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 TMPRSS5Q9H3S3 457 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 CLCF1Q9UBD9 225 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 PSG11Q9UQ72 335 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 DBX1A6NMT0 343 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 ERGP11308 486 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 MPLP40238 635 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 GGTLC2Q14390 218 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 COL19A1Q14993 1142 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 ATP6V1FQ16864 119 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 C9orf152Q5JTZ5 239 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 FAM103A1Q9BTL3 118 aaKnown RBP9.49□□□□□ -0.89
CD44-201ENST00000263398 GNB4Q9HAV0 340 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 GPR27Q9NS67 375 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 LPAR3Q9UBY5 353 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 KIF13BQ9NQT8 1826 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 CD200P41217 278 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 P2RY1P47900 373 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 GAB4Q2WGN9 574 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 DHRS13Q6UX07 377 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 ETV3LQ6ZN32 361 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 SPRED2Q7Z698 418 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 PTX4Q96A99 478 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 SARGQ9BW04 601 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 M1APQ8TC57 530 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 TMEM230Q96A57 120 aa9.49□□□□□ -0.89
CD44-201ENST00000263398 LHX9Q9NQ69 397 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms