RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 GK3PQ14409 553 aa15.53■□□□□ 0.08
CLN3-262ENST00000637699 EDDM3AQ14507 147 aa15.53■□□□□ 0.08
CLN3-262ENST00000637699 ZNF829Q3KNS6 432 aaPredicted RBP15.53■□□□□ 0.08
CLN3-262ENST00000637699 MINOS1Q5TGZ0 78 aa15.53■□□□□ 0.08
CLN3-262ENST00000637699 LCN1P1Q5VSP4 162 aa15.53■□□□□ 0.08
CLN3-262ENST00000637699 SPATA24Q86W54 205 aa15.53■□□□□ 0.08
CLN3-262ENST00000637699 ZNF679Q8IYX0 411 aa15.53■□□□□ 0.08
CLN3-262ENST00000637699 HS3ST5Q8IZT8 346 aa15.53■□□□□ 0.08
CLN3-262ENST00000637699 ZNF676Q8N7Q3 588 aa15.53■□□□□ 0.08
CLN3-262ENST00000637699 MYDGFQ969H8 173 aa15.53■□□□□ 0.08
CLN3-262ENST00000637699 IKZF2Q9UKS7 526 aa15.53■□□□□ 0.08
CLN3-262ENST00000637699 POMPQ9Y244 141 aa15.53■□□□□ 0.08
CLN3-262ENST00000637699 MINOS1-NBL1R4GNA1 71 aa15.53■□□□□ 0.08
CLN3-262ENST00000637699 DSCAML1Q8TD84 2053 aa15.52■□□□□ 0.08
CLN3-262ENST00000637699 TCRBV3S1A0A5B6 114 aa15.52■□□□□ 0.08
CLN3-262ENST00000637699 ARRDC5A6NEK1 342 aa15.52■□□□□ 0.08
CLN3-262ENST00000637699 FAM90A22PA8MWA6 464 aa15.52■□□□□ 0.08
CLN3-262ENST00000637699 DLGAP1O14490 977 aa15.52■□□□□ 0.08
CLN3-262ENST00000637699 GNGT2O14610 69 aa15.52■□□□□ 0.08
CLN3-262ENST00000637699 ZNF737O75373 536 aa15.52■□□□□ 0.08
CLN3-262ENST00000637699 DNAJC8O75937 253 aaPredicted RBP15.52■□□□□ 0.08
CLN3-262ENST00000637699 CHRM2P08172 466 aa15.52■□□□□ 0.08
CLN3-262ENST00000637699 CD24P25063 80 aa15.52■□□□□ 0.08
CLN3-262ENST00000637699 MPZP25189 248 aa15.52■□□□□ 0.08
CLN3-262ENST00000637699 CDK5Q00535 292 aa15.52■□□□□ 0.08
CLN3-262ENST00000637699 ROM1Q03395 351 aa15.52■□□□□ 0.08
CLN3-262ENST00000637699 CD69Q07108 199 aa15.52■□□□□ 0.08
CLN3-262ENST00000637699 KHDC1LQ5JSQ8 128 aa15.52■□□□□ 0.08
CLN3-262ENST00000637699 TMEM236Q5W0B7 351 aa15.52■□□□□ 0.08
CLN3-262ENST00000637699 TMEM42Q69YG0 159 aa15.52■□□□□ 0.08
CLN3-262ENST00000637699 TCF23Q7RTU1 214 aa15.52■□□□□ 0.08
CLN3-262ENST00000637699 TRMT10AQ8TBZ6 339 aaKnown RBP15.52■□□□□ 0.08
CLN3-262ENST00000637699 CADM1Q9BY67 442 aaKnown RBP15.52■□□□□ 0.08
CLN3-262ENST00000637699 INPP5EQ9NRR6 644 aa15.52■□□□□ 0.08
CLN3-262ENST00000637699 COPS3Q9UNS2 423 aa15.52■□□□□ 0.08
CLN3-262ENST00000637699 IGHV2-26A0A0B4J1V2 119 aa15.51■□□□□ 0.07
CLN3-262ENST00000637699 FAM230AA0A1W2PPH8 454 aa15.51■□□□□ 0.07
CLN3-262ENST00000637699 F8VVB4 439 aa15.51■□□□□ 0.07
CLN3-262ENST00000637699 F8VWA3 439 aa15.51■□□□□ 0.07
CLN3-262ENST00000637699 INMTO95050 263 aa15.51■□□□□ 0.07
CLN3-262ENST00000637699 DUS4LO95620 317 aaKnown RBP15.51■□□□□ 0.07
CLN3-262ENST00000637699 LPLP06858 475 aa15.51■□□□□ 0.07
CLN3-262ENST00000637699 OSMP13725 252 aa15.51■□□□□ 0.07
CLN3-262ENST00000637699 PRKACGP22612 351 aa15.51■□□□□ 0.07
CLN3-262ENST00000637699 C10orf99Q6UWK7 81 aa15.51■□□□□ 0.07
CLN3-262ENST00000637699 OR8H2Q8N162 312 aa15.51■□□□□ 0.07
CLN3-262ENST00000637699 TPRX1Q8N7U7 411 aa15.51■□□□□ 0.07
CLN3-262ENST00000637699 CAPSLQ8WWF8 208 aa15.51■□□□□ 0.07
CLN3-262ENST00000637699 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP15.51■□□□□ 0.07
CLN3-262ENST00000637699 SESN1Q9Y6P5 492 aa15.51■□□□□ 0.07
CLN3-262ENST00000637699 V9GYS6 101 aa15.51■□□□□ 0.07
CLN3-262ENST00000637699 hADV38S2A0JD32 116 aa15.5■□□□□ 0.07
CLN3-262ENST00000637699 TMEM82A0PJX8 343 aa15.5■□□□□ 0.07
CLN3-262ENST00000637699 LOC110117498-PIK3R3F6TDL0 507 aa15.5■□□□□ 0.07
CLN3-262ENST00000637699 MAGEB4O15481 346 aaPredicted RBP15.5■□□□□ 0.07
CLN3-262ENST00000637699 FKBP6O75344 327 aa15.5■□□□□ 0.07
CLN3-262ENST00000637699 CBX1P83916 185 aa15.5■□□□□ 0.07
CLN3-262ENST00000637699 MEF2CQ06413 473 aaPredicted RBP15.5■□□□□ 0.07
CLN3-262ENST00000637699 BNIP1Q12981 228 aa15.5■□□□□ 0.07
CLN3-262ENST00000637699 IL24Q13007 206 aa15.5■□□□□ 0.07
CLN3-262ENST00000637699 ABCA11PQ4W5N1 156 aa15.5■□□□□ 0.07
CLN3-262ENST00000637699 BCL2L15Q5TBC7 163 aa15.5■□□□□ 0.07
CLN3-262ENST00000637699 OR4X2Q8NGF9 303 aa15.5■□□□□ 0.07
CLN3-262ENST00000637699 OR14K1Q8NGZ2 314 aa15.5■□□□□ 0.07
CLN3-262ENST00000637699 ASB17Q8WXJ9 295 aa15.5■□□□□ 0.07
CLN3-262ENST00000637699 WWC2-AS2Q96NR7 200 aa15.5■□□□□ 0.07
CLN3-262ENST00000637699 APOL4Q9BPW4 351 aa15.5■□□□□ 0.07
CLN3-262ENST00000637699 PKIBQ9C010 78 aa15.5■□□□□ 0.07
CLN3-262ENST00000637699 TMEM133Q9H2Q1 129 aa15.5■□□□□ 0.07
CLN3-262ENST00000637699 ZNF556Q9HAH1 456 aa15.5■□□□□ 0.07
CLN3-262ENST00000637699 MTCH1Q9NZJ7 389 aa15.5■□□□□ 0.07
CLN3-262ENST00000637699 TMEM14AQ9Y6G1 99 aa15.5■□□□□ 0.07
CLN3-262ENST00000637699 A0A1B0GTI1 187 aa15.49■□□□□ 0.07
CLN3-262ENST00000637699 CCDC182A6NF36 153 aa15.49■□□□□ 0.07
CLN3-262ENST00000637699 E2F6O75461 281 aa15.49■□□□□ 0.07
CLN3-262ENST00000637699 SRSF10O75494 262 aaKnown RBP15.49■□□□□ 0.07
CLN3-262ENST00000637699 CLIC3O95833 236 aa15.49■□□□□ 0.07
CLN3-262ENST00000637699 HOXB6P17509 224 aaKnown RBP15.49■□□□□ 0.07
CLN3-262ENST00000637699 HTR1DP28221 377 aa15.49■□□□□ 0.07
CLN3-262ENST00000637699 SNAPC1Q16533 368 aa15.49■□□□□ 0.07
CLN3-262ENST00000637699 PLEKHG7Q6ZR37 379 aa15.49■□□□□ 0.07
CLN3-262ENST00000637699 STMN2Q93045 179 aa15.49■□□□□ 0.07
CLN3-262ENST00000637699 SLAMF9Q96A28 289 aa15.49■□□□□ 0.07
CLN3-262ENST00000637699 AKR1E2Q96JD6 320 aa15.49■□□□□ 0.07
CLN3-262ENST00000637699 SNX22Q96L94 193 aa15.49■□□□□ 0.07
CLN3-262ENST00000637699 CEP19Q96LK0 163 aa15.49■□□□□ 0.07
CLN3-262ENST00000637699 CLEC7AQ9BXN2 247 aa15.49■□□□□ 0.07
CLN3-262ENST00000637699 TEX12Q9BXU0 123 aa15.49■□□□□ 0.07
CLN3-262ENST00000637699 CHST6Q9GZX3 395 aa15.49■□□□□ 0.07
CLN3-262ENST00000637699 TVP23BQ9NYZ1 205 aa15.49■□□□□ 0.07
CLN3-262ENST00000637699 DNAJB9Q9UBS3 223 aa15.49■□□□□ 0.07
CLN3-262ENST00000637699 OR52A1Q9UKL2 312 aa15.49■□□□□ 0.07
CLN3-262ENST00000637699 SH2D7A6NKC9 451 aaPredicted RBP15.48■□□□□ 0.07
CLN3-262ENST00000637699 E9PQ18 207 aa15.48■□□□□ 0.07
CLN3-262ENST00000637699 EGFEM1PQ0D2K5 195 aa15.48■□□□□ 0.07
CLN3-262ENST00000637699 IL18R1Q13478 541 aa15.48■□□□□ 0.07
CLN3-262ENST00000637699 C16orf82Q7Z2V1 217 aa15.48■□□□□ 0.07
CLN3-262ENST00000637699 ELMOD2Q8IZ81 293 aa15.48■□□□□ 0.07
CLN3-262ENST00000637699 B9D2Q9BPU9 175 aa15.48■□□□□ 0.07
CLN3-262ENST00000637699 SLC25A33Q9BSK2 321 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms