RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 GUCA2AQ02747 115 aa19.61■□□□□ 0.73
SHMT1-206ENST00000579558 KLRD1Q13241 179 aa19.61■□□□□ 0.73
SHMT1-206ENST00000579558 MKXQ8IYA7 352 aa19.61■□□□□ 0.73
SHMT1-206ENST00000579558 OR13C9Q8NGT0 318 aa19.61■□□□□ 0.73
SHMT1-206ENST00000579558 HAVCR2Q8TDQ0 301 aa19.61■□□□□ 0.73
SHMT1-206ENST00000579558 OPALINQ96PE5 141 aa19.61■□□□□ 0.73
SHMT1-206ENST00000579558 METTL8Q9H825 291 aaKnown RBP19.61■□□□□ 0.73
SHMT1-206ENST00000579558 TNFRSF19Q9NS68 423 aa19.61■□□□□ 0.73
SHMT1-206ENST00000579558 NBEAL1Q6ZS30 2694 aa19.6■□□□□ 0.73
SHMT1-206ENST00000579558 A0A0U1RQK1 487 aa19.6■□□□□ 0.73
SHMT1-206ENST00000579558 RNASEK-C17orf49H0YIS7 233 aa19.6■□□□□ 0.73
SHMT1-206ENST00000579558 TK1P04183 234 aa19.6■□□□□ 0.73
SHMT1-206ENST00000579558 MELTFP08582 738 aa19.6■□□□□ 0.73
SHMT1-206ENST00000579558 EEF1B2P24534 225 aaKnown RBP19.6■□□□□ 0.73
SHMT1-206ENST00000579558 DCKP27707 260 aa19.6■□□□□ 0.73
SHMT1-206ENST00000579558 CFPP27918 469 aa19.6■□□□□ 0.73
SHMT1-206ENST00000579558 RPL31P62899 125 aaKnown RBP19.6■□□□□ 0.73
SHMT1-206ENST00000579558 COL10A1Q03692 680 aa19.6■□□□□ 0.73
SHMT1-206ENST00000579558 AWAT1Q58HT5 328 aa19.6■□□□□ 0.73
SHMT1-206ENST00000579558 OGFRL1Q5TC84 451 aaPredicted RBP19.6■□□□□ 0.73
SHMT1-206ENST00000579558 Q8IYB0 196 aa19.6■□□□□ 0.73
SHMT1-206ENST00000579558 PIP4P2Q8N4L2 257 aa19.6■□□□□ 0.73
SHMT1-206ENST00000579558 C3orf56Q8N813 242 aa19.6■□□□□ 0.73
SHMT1-206ENST00000579558 ASCC1Q8N9N2 400 aaKnown RBP19.6■□□□□ 0.73
SHMT1-206ENST00000579558 EMG1Q92979 244 aaKnown RBP19.6■□□□□ 0.73
SHMT1-206ENST00000579558 PDCD1LG2Q9BQ51 273 aa19.6■□□□□ 0.73
SHMT1-206ENST00000579558 FAM234AQ9H0X4 552 aa19.6■□□□□ 0.73
SHMT1-206ENST00000579558 TRBV2A0A0J9YWF9 115 aa19.59■□□□□ 0.73
SHMT1-206ENST00000579558 A0A1W2PRD5 423 aa19.59■□□□□ 0.73
SHMT1-206ENST00000579558 A0A1W2PRF3 423 aa19.59■□□□□ 0.73
SHMT1-206ENST00000579558 A0A1W2PRM7 423 aa19.59■□□□□ 0.73
SHMT1-206ENST00000579558 H0YAE9 185 aa19.59■□□□□ 0.73
SHMT1-206ENST00000579558 CASQ2O14958 399 aaPredicted RBP19.59■□□□□ 0.73
SHMT1-206ENST00000579558 CHRM2P08172 466 aa19.59■□□□□ 0.73
SHMT1-206ENST00000579558 ETV1P50549 477 aa19.59■□□□□ 0.73
SHMT1-206ENST00000579558 FOXL1Q12952 345 aa19.59■□□□□ 0.73
SHMT1-206ENST00000579558 IL18R1Q13478 541 aa19.59■□□□□ 0.73
SHMT1-206ENST00000579558 NCR3LG1Q68D85 454 aa19.59■□□□□ 0.73
SHMT1-206ENST00000579558 C16orf87Q6PH81 154 aa19.59■□□□□ 0.73
SHMT1-206ENST00000579558 OR4M1Q8NGD0 313 aa19.59■□□□□ 0.73
SHMT1-206ENST00000579558 TSEN15Q8WW01 171 aaKnown RBP19.59■□□□□ 0.73
SHMT1-206ENST00000579558 TNFRSF14Q92956 283 aa19.59■□□□□ 0.73
SHMT1-206ENST00000579558 RFT1Q96AA3 541 aa19.59■□□□□ 0.73
SHMT1-206ENST00000579558 ZCCHC4Q9H5U6 513 aa19.59■□□□□ 0.73
SHMT1-206ENST00000579558 CAB39Q9Y376 341 aaPredicted RBP19.59■□□□□ 0.73
SHMT1-206ENST00000579558 A0A1W2PPH5 198 aa19.58■□□□□ 0.72
SHMT1-206ENST00000579558 NPFFO15130 113 aa19.58■□□□□ 0.72
SHMT1-206ENST00000579558 SPRY1O43609 319 aaPredicted RBP19.58■□□□□ 0.72
SHMT1-206ENST00000579558 MT-ND2P03891 347 aa19.58■□□□□ 0.72
SHMT1-206ENST00000579558 BCL3P20749 454 aa19.58■□□□□ 0.72
SHMT1-206ENST00000579558 CAPGP40121 348 aa19.58■□□□□ 0.72
SHMT1-206ENST00000579558 GTF2A1P52655 376 aaPredicted RBP19.58■□□□□ 0.72
SHMT1-206ENST00000579558 FIP1L1Q6UN15 594 aaKnown RBP19.58■□□□□ 0.72
SHMT1-206ENST00000579558 TMPRSS11AQ6ZMR5 421 aa19.58■□□□□ 0.72
SHMT1-206ENST00000579558 OR5D13Q8NGL4 314 aa19.58■□□□□ 0.72
SHMT1-206ENST00000579558 SPACA5Q96QH8 159 aa19.58■□□□□ 0.72
SHMT1-206ENST00000579558 UNKLQ9H9P5 680 aaKnown RBP19.58■□□□□ 0.72
SHMT1-206ENST00000579558 NEK6Q9HC98 313 aa19.58■□□□□ 0.72
SHMT1-206ENST00000579558 RBFOX1Q9NWB1 397 aaKnown RBP19.58■□□□□ 0.72
SHMT1-206ENST00000579558 DHDHQ9UQ10 334 aa19.58■□□□□ 0.72
SHMT1-206ENST00000579558 FAM96BQ9Y3D0 163 aa19.58■□□□□ 0.72
SHMT1-206ENST00000579558 K7N7A8 449 aa19.57■□□□□ 0.72
SHMT1-206ENST00000579558 MYL12AP19105 171 aa19.57■□□□□ 0.72
SHMT1-206ENST00000579558 NPBWR2P48146 333 aa19.57■□□□□ 0.72
SHMT1-206ENST00000579558 PDZK1IP1Q13113 114 aa19.57■□□□□ 0.72
SHMT1-206ENST00000579558 OR2G6Q5TZ20 316 aa19.57■□□□□ 0.72
SHMT1-206ENST00000579558 TMEM200BQ69YZ2 307 aa19.57■□□□□ 0.72
SHMT1-206ENST00000579558 SERPINA12Q8IW75 414 aa19.57■□□□□ 0.72
SHMT1-206ENST00000579558 TMEM86BQ8N661 226 aa19.57■□□□□ 0.72
SHMT1-206ENST00000579558 TBC1D15Q8TC07 691 aa19.57■□□□□ 0.72
SHMT1-206ENST00000579558 SSMEM1Q8WWF3 244 aa19.57■□□□□ 0.72
SHMT1-206ENST00000579558 IL36RNQ9UBH0 155 aa19.57■□□□□ 0.72
SHMT1-206ENST00000579558 DIMT1Q9UNQ2 313 aaKnown RBP19.57■□□□□ 0.72
SHMT1-206ENST00000579558 EXOSC1Q9Y3B2 195 aaKnown RBP19.57■□□□□ 0.72
SHMT1-206ENST00000579558 POMT1Q9Y6A1 747 aa19.57■□□□□ 0.72
SHMT1-206ENST00000579558 HSPE1-MOB4S4R3N1 261 aa19.57■□□□□ 0.72
SHMT1-206ENST00000579558 HAND1O96004 215 aa19.56■□□□□ 0.72
SHMT1-206ENST00000579558 UBE2E1P51965 193 aa19.56■□□□□ 0.72
SHMT1-206ENST00000579558 XAF1Q6GPH4 301 aa19.56■□□□□ 0.72
SHMT1-206ENST00000579558 RPL22L1Q6P5R6 122 aaKnown RBP19.56■□□□□ 0.72
SHMT1-206ENST00000579558 LDLRAD3Q86YD5 345 aa19.56■□□□□ 0.72
SHMT1-206ENST00000579558 C8orf59Q8N0T1 100 aaPredicted RBP19.56■□□□□ 0.72
SHMT1-206ENST00000579558 FAM58AQ8N1B3 248 aa19.56■□□□□ 0.72
SHMT1-206ENST00000579558 PNKDQ8N490 385 aa19.56■□□□□ 0.72
SHMT1-206ENST00000579558 PARP16Q8N5Y8 322 aa19.56■□□□□ 0.72
SHMT1-206ENST00000579558 OR5D14Q8NGL3 314 aa19.56■□□□□ 0.72
SHMT1-206ENST00000579558 VCXQ9H320 206 aa19.56■□□□□ 0.72
SHMT1-206ENST00000579558 TENM1Q9UKZ4 2725 aa19.56■□□□□ 0.72
SHMT1-206ENST00000579558 ANGPTL7O43827 346 aa19.55■□□□□ 0.72
SHMT1-206ENST00000579558 ZNF737O75373 536 aa19.55■□□□□ 0.72
SHMT1-206ENST00000579558 HCKP08631 526 aa19.55■□□□□ 0.72
SHMT1-206ENST00000579558 FBP1P09467 338 aa19.55■□□□□ 0.72
SHMT1-206ENST00000579558 GNAO1P09471 354 aa19.55■□□□□ 0.72
SHMT1-206ENST00000579558 CALCBP10092 127 aa19.55■□□□□ 0.72
SHMT1-206ENST00000579558 PIPP12273 146 aaPredicted RBP19.55■□□□□ 0.72
SHMT1-206ENST00000579558 PRKACAP17612 351 aa19.55■□□□□ 0.72
SHMT1-206ENST00000579558 SNU13P55769 128 aaKnown RBP19.55■□□□□ 0.72
SHMT1-206ENST00000579558 MED21Q13503 144 aa19.55■□□□□ 0.72
SHMT1-206ENST00000579558 CDK5R1Q15078 307 aa19.55■□□□□ 0.72
SHMT1-206ENST00000579558 CCDC58Q4VC31 144 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 115.2 ms