RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 TMEM213A2RRL7 107 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 ANKRD63C9JTQ0 380 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 H0YHG0 523 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 ACOT8O14734 319 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 LIN7AO14910 233 aaPredicted RBP4.41□□□□□ -1.7
VPS53-219ENST00000576019 TCF21O43680 179 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 PTTG1O95997 202 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 IGKV2-30P06310 120 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 OR8U9P0C7N5 309 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 GGT1P19440 569 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 NTSP30990 170 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 BTCP35070 178 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 HCCSP53701 268 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 TAS2R60P59551 318 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 TFDP2Q14188 446 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 ATP6AP1Q15904 470 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 C11orf71Q6IPW1 123 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 IGFL2Q6UWQ7 119 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 WDR82Q6UXN9 313 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 ZNF620Q6ZNG0 422 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 DNM1P46Q6ZS02 220 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 MBOAT2Q6ZWT7 520 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 DCXRQ7Z4W1 244 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 ZBTB8OSQ8IWT0 167 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 ZNF738Q8NE65 137 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 OR10G3Q8NGC4 313 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 OR8U1Q8NH10 309 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 ITLN1Q8WWA0 313 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 ADTRPQ96IZ2 230 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 ZNF681Q96N22 645 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 NODALQ96S42 347 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 HIST1H4GQ99525 98 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 DCUN1D5Q9BTE7 237 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 RPF2Q9H7B2 306 aaKnown RBP4.41□□□□□ -1.7
VPS53-219ENST00000576019 TMBIM4Q9HC24 238 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 NLE1Q9NVX2 485 aaPredicted RBP4.41□□□□□ -1.7
VPS53-219ENST00000576019 VAPAQ9P0L0 249 aa4.41□□□□□ -1.7
VPS53-219ENST00000576019 PHF3Q92576 2039 aaKnown RBP4.41□□□□□ -1.7
VPS53-219ENST00000576019 IGLV7-46A0A075B6I9 117 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 ANKRD20A5PA0PJZ0 165 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 GOLGA6L10A6NI86 522 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 CLDN34H7C241 214 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 AGPAT2O15120 278 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 HDAC3O15379 428 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 SLC16A7O60669 478 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 ZNF253O75346 499 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 PSKH1P11801 424 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 IGFBP3P17936 291 aaPredicted RBP4.4□□□□□ -1.71
VPS53-219ENST00000576019 MAGP20916 626 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 SERPINB5P36952 375 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 GLP1RP43220 463 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 MAGEA3P43357 314 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 FABP6P51161 128 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 BASP1P80723 227 aaKnown RBP4.4□□□□□ -1.71
VPS53-219ENST00000576019 PITPNAQ00169 270 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 MXD1Q05195 221 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 ZNF763Q0D2J5 394 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 CLINT1Q14677 625 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 SLC1A5Q15758 541 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 RWDD4Q6NW29 188 aaKnown RBP4.4□□□□□ -1.71
VPS53-219ENST00000576019 UNQ9370/PRO34162Q6UXP9 181 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 TMUB2Q71RG4 321 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 THOC6Q86W42 341 aaKnown RBP4.4□□□□□ -1.71
VPS53-219ENST00000576019 GKN2Q86XP6 184 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 LRRC52Q8N7C0 313 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 ZNF614Q8N883 585 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 OR2Y1Q8NGV0 311 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 RNASEH2CQ8TDP1 164 aaKnown RBP4.4□□□□□ -1.71
VPS53-219ENST00000576019 LYZL4Q96KX0 146 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 UGT1A7Q9HAW7 530 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 UGT1A8Q9HAW9 530 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 SDF2L1Q9HCN8 221 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 RHBDL2Q9NX52 303 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 EMC3Q9P0I2 261 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 DPM3Q9P2X0 92 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 BTNL2Q9UIR0 455 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 UGT2A1Q9Y4X1 527 aa4.4□□□□□ -1.71
VPS53-219ENST00000576019 HCRTR1O43613 425 aa4.39□□□□□ -1.71
VPS53-219ENST00000576019 IGLV2-11P01706 119 aa4.39□□□□□ -1.71
VPS53-219ENST00000576019 SMIM10L1P0DMW3 83 aa4.39□□□□□ -1.71
VPS53-219ENST00000576019 GFAPP14136 432 aa4.39□□□□□ -1.71
VPS53-219ENST00000576019 USF1P22415 310 aaPredicted RBP4.39□□□□□ -1.71
VPS53-219ENST00000576019 CMA1P23946 247 aa4.39□□□□□ -1.71
VPS53-219ENST00000576019 HLA-DMAP28067 261 aa4.39□□□□□ -1.71
VPS53-219ENST00000576019 MAS1LP35410 378 aa4.39□□□□□ -1.71
VPS53-219ENST00000576019 PFN3P60673 137 aa4.39□□□□□ -1.71
VPS53-219ENST00000576019 ACTG1P63261 375 aa4.39□□□□□ -1.71
VPS53-219ENST00000576019 IHHQ14623 411 aa4.39□□□□□ -1.71
VPS53-219ENST00000576019 ZNHIT3Q15649 155 aaPredicted RBP4.39□□□□□ -1.71
VPS53-219ENST00000576019 BCL2A1Q16548 175 aa4.39□□□□□ -1.71
VPS53-219ENST00000576019 TMEM30BQ3MIR4 351 aa4.39□□□□□ -1.71
VPS53-219ENST00000576019 C1orf100Q5SVJ3 147 aa4.39□□□□□ -1.71
VPS53-219ENST00000576019 WDR74Q6RFH5 385 aaPredicted RBP4.39□□□□□ -1.71
VPS53-219ENST00000576019 OR6X1Q8NH79 312 aa4.39□□□□□ -1.71
VPS53-219ENST00000576019 FANK1Q8TC84 345 aa4.39□□□□□ -1.71
VPS53-219ENST00000576019 IFT81Q8WYA0 676 aa4.39□□□□□ -1.71
VPS53-219ENST00000576019 OR5P2Q8WZ92 322 aa4.39□□□□□ -1.71
VPS53-219ENST00000576019 SMIM10Q96HG1 83 aa4.39□□□□□ -1.71
VPS53-219ENST00000576019 RIOK2Q9BVS4 552 aaKnown RBP4.39□□□□□ -1.71
VPS53-219ENST00000576019 SHCBP1LQ9BZQ2 653 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 106.7 ms