RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 CNN3Q15417 329 aaKnown RBP8.42□□□□□ -1.06
CCDC88C-206ENST00000553437 AWAT1Q58HT5 328 aa8.42□□□□□ -1.06
CCDC88C-206ENST00000553437 TTC23Q5W5X9 447 aa8.42□□□□□ -1.06
CCDC88C-206ENST00000553437 HCP5Q6MZN7 132 aa8.42□□□□□ -1.06
CCDC88C-206ENST00000553437 SLC25A26Q70HW3 274 aa8.42□□□□□ -1.06
CCDC88C-206ENST00000553437 RNF144BQ7Z419 303 aa8.42□□□□□ -1.06
CCDC88C-206ENST00000553437 C11orf42Q8N5U0 333 aa8.42□□□□□ -1.06
CCDC88C-206ENST00000553437 CNIH3Q8TBE1 160 aa8.42□□□□□ -1.06
CCDC88C-206ENST00000553437 TAF15Q92804 592 aaKnown RBP eCLIP8.42□□□□□ -1.06
CCDC88C-206ENST00000553437 ZDHHC16Q969W1 377 aa8.42□□□□□ -1.06
CCDC88C-206ENST00000553437 SLAMF9Q96A28 289 aa8.42□□□□□ -1.06
CCDC88C-206ENST00000553437 SLC25A28Q96A46 364 aa8.42□□□□□ -1.06
CCDC88C-206ENST00000553437 BORCS8Q96FH0 119 aa8.42□□□□□ -1.06
CCDC88C-206ENST00000553437 CEP19Q96LK0 163 aa8.42□□□□□ -1.06
CCDC88C-206ENST00000553437 MYCBPQ99417 103 aaPredicted RBP8.42□□□□□ -1.06
CCDC88C-206ENST00000553437 PDCD1LG2Q9BQ51 273 aa8.42□□□□□ -1.06
CCDC88C-206ENST00000553437 SEBOXQ9HB31 216 aaPredicted RBP8.42□□□□□ -1.06
CCDC88C-206ENST00000553437 C19orf12Q9NSK7 152 aa8.42□□□□□ -1.06
CCDC88C-206ENST00000553437 A0A1W2PQ09 198 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 K7N7A8 449 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 SLC1A7O00341 560 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 CASQ2O14958 399 aaPredicted RBP8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 ZNF737O75373 536 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 TK1P04183 234 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 ZNF20P17024 532 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 DCKP27707 260 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 NPBWR2P48146 333 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 RBP2P50120 134 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 ETV1P50549 477 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 CAPZA1P52907 286 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 ATP1B3P54709 279 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 MTCP1P56278 107 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 COL10A1Q03692 680 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 KLRD1Q13241 179 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 OGFRL1Q5TC84 451 aaPredicted RBP8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 TMEM200BQ69YZ2 307 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 XAF1Q6GPH4 301 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 LAIR2Q6ISS4 152 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 C16orf87Q6PH81 154 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 FAM185AQ8N0U4 392 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 DHRSXQ8N5I4 330 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 TMEM86BQ8N661 226 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 ZNF676Q8N7Q3 588 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 OR13C3Q8NGS6 347 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 RPS4Y2Q8TD47 263 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 CYGBQ8WWM9 190 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 SPSB1Q96BD6 273 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 FAM234AQ9H0X4 552 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 METTL8Q9H825 291 aaKnown RBP8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 IL36RNQ9UBH0 155 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 OR14J1Q9UGF5 321 aa8.41□□□□□ -1.06
CCDC88C-206ENST00000553437 IGKV1-12A0A0C4DH73 117 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 TRBV2A0A0J9YWF9 115 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 TMEM82A0PJX8 343 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 TMEM212A6NML5 194 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 SPRY1O43609 319 aaPredicted RBP8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 INMTO95050 263 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 ALX3O95076 343 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 IGKV1D-12P01611 117 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 CHRM2P08172 466 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 GNAO1P09471 354 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 CCDC159P0C7I6 412 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 IER3P46695 156 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 UBE2E1P51965 193 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 GBX2P52951 348 aaPredicted RBP8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 DLX6P56179 175 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 RPL31P62899 125 aaKnown RBP8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 GUCA2AQ02747 115 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 FOXL1Q12952 345 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 PDZK1IP1Q13113 114 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 OR2G6Q5TZ20 316 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 LHFPL2Q6ZUX7 228 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 LDLRAD3Q86YD5 345 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 MKXQ8IYA7 352 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 PNKDQ8N490 385 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 PARP16Q8N5Y8 322 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 OR4M1Q8NGD0 313 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 OR13C9Q8NGT0 318 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 OR5AK2Q8NH90 309 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 HAVCR2Q8TDQ0 301 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 RGP1Q92546 391 aaPredicted RBP8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 RFT1Q96AA3 541 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 AJUBAQ96IF1 538 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 OPALINQ96PE5 141 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 CHIAQ9BZP6 476 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 ZCCHC4Q9H5U6 513 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 RBFOX1Q9NWB1 397 aaKnown RBP8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 CLEC2DQ9UHP7 191 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 DIMT1Q9UNQ2 313 aaKnown RBP8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 CAB39Q9Y376 341 aaPredicted RBP8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 POMT1Q9Y6A1 747 aa8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 SIRT4Q9Y6E7 314 aaPredicted RBP8.4□□□□□ -1.06
CCDC88C-206ENST00000553437 A0A1W2PRD5 423 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 A0A1W2PRF3 423 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 A0A1W2PRM7 423 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 FAM181BA6NEQ2 426 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 H0YAE9 185 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 NPFFO15130 113 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 OGG1O15527 345 aa8.39□□□□□ -1.07
CCDC88C-206ENST00000553437 ANGPTL7O43827 346 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms