RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 HLA-DRB3P79483 266 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 INSM1Q01101 510 aaPredicted RBP11.66□□□□□ -0.54
TCOF1-213ENST00000514442 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.66□□□□□ -0.54
TCOF1-213ENST00000514442 BORCS7Q96B45 105 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 PCOLCE2Q9UKZ9 415 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 A0A1B0GTQ1 180 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 XRCC2O43543 280 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 HEXAP06865 529 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 GSTP1P09211 210 aaKnown RBP11.66□□□□□ -0.54
TCOF1-213ENST00000514442 PTGER4P35408 488 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 VAMP3Q15836 100 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 ZNF141Q15928 474 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 C1QL3Q5VWW1 255 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 PGLYRP3Q96LB9 341 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 RTL8AQ9BWD3 113 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 B3GAT1Q9P2W7 334 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 TMED3Q9Y3Q3 217 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 TRIOBPQ9H2D6 2365 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 M0R1B8 84 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 TPPP2P59282 170 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 TMEM183BQ1AE95 376 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 GPX8Q8TED1 209 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 RAB24Q969Q5 203 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 SLC25A38Q96DW6 304 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 VSTM2LQ96N03 204 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 SMIM7Q9BQ49 75 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 FLRT3Q9NZU0 649 aa11.66□□□□□ -0.54
TCOF1-213ENST00000514442 TIMM8BQ9Y5J9 83 aaPredicted RBP11.66□□□□□ -0.54
TCOF1-213ENST00000514442 IGKV1-8A0A0C4DH67 115 aa11.65□□□□□ -0.54
TCOF1-213ENST00000514442 SIRPB1O00241 398 aa11.65□□□□□ -0.54
TCOF1-213ENST00000514442 TNFSF14O43557 240 aa11.65□□□□□ -0.54
TCOF1-213ENST00000514442 CD1AP06126 327 aa11.65□□□□□ -0.54
TCOF1-213ENST00000514442 CATR1Q13166 79 aa11.65□□□□□ -0.54
TCOF1-213ENST00000514442 ZNF787Q6DD87 383 aa11.65□□□□□ -0.54
TCOF1-213ENST00000514442 ABLIM2Q6H8Q1 611 aa11.65□□□□□ -0.54
TCOF1-213ENST00000514442 M1APQ8TC57 530 aa11.65□□□□□ -0.54
TCOF1-213ENST00000514442 H3BQ15 152 aa11.65□□□□□ -0.54
TCOF1-213ENST00000514442 CD200P41217 278 aa11.65□□□□□ -0.54
TCOF1-213ENST00000514442 TRIP6Q15654 476 aaKnown RBP11.65□□□□□ -0.54
TCOF1-213ENST00000514442 PLXDC2Q6UX71 529 aa11.65□□□□□ -0.54
TCOF1-213ENST00000514442 OR8B4Q96RC9 309 aa11.65□□□□□ -0.54
TCOF1-213ENST00000514442 FAM173AQ9BQD7 235 aa11.65□□□□□ -0.54
TCOF1-213ENST00000514442 DDA1Q9BW61 102 aa11.65□□□□□ -0.54
TCOF1-213ENST00000514442 DOK5Q9P104 306 aa11.65□□□□□ -0.54
TCOF1-213ENST00000514442 TCF21O43680 179 aa11.65□□□□□ -0.54
TCOF1-213ENST00000514442 OPN1MWP04001 364 aa11.65□□□□□ -0.54
TCOF1-213ENST00000514442 OPN1MW2P0DN77 364 aa11.65□□□□□ -0.54
TCOF1-213ENST00000514442 OPN1MW3P0DN78 364 aa11.65□□□□□ -0.54
TCOF1-213ENST00000514442 NDUFB7P17568 137 aa11.65□□□□□ -0.54
TCOF1-213ENST00000514442 ARR3P36575 388 aa11.65□□□□□ -0.54
TCOF1-213ENST00000514442 CRYBA2P53672 197 aa11.65□□□□□ -0.54
TCOF1-213ENST00000514442 TMEM37Q8WXS4 190 aa11.65□□□□□ -0.54
TCOF1-213ENST00000514442 SEH1LQ96EE3 360 aa11.65□□□□□ -0.54
TCOF1-213ENST00000514442 KCNK15Q9H427 330 aa11.65□□□□□ -0.54
TCOF1-213ENST00000514442 LHX9Q9NQ69 397 aa11.65□□□□□ -0.54
TCOF1-213ENST00000514442 VSIG4Q9Y279 399 aa11.65□□□□□ -0.54
TCOF1-213ENST00000514442 DTX4Q9Y2E6 619 aa11.65□□□□□ -0.54
TCOF1-213ENST00000514442 C5orf52A6NGY3 159 aa11.65□□□□□ -0.55
TCOF1-213ENST00000514442 FIGNL2A6NMB9 653 aa11.65□□□□□ -0.55
TCOF1-213ENST00000514442 B4DEV8 164 aa11.65□□□□□ -0.55
TCOF1-213ENST00000514442 ENSAO43768 121 aaKnown RBP11.65□□□□□ -0.55
TCOF1-213ENST00000514442 CD8AP01732 235 aa11.65□□□□□ -0.55
TCOF1-213ENST00000514442 FOLR2P14207 255 aa11.65□□□□□ -0.55
TCOF1-213ENST00000514442 WFDC8Q8IUA0 241 aa11.65□□□□□ -0.55
TCOF1-213ENST00000514442 D2HGDHQ8N465 521 aa11.65□□□□□ -0.55
TCOF1-213ENST00000514442 OR51H1Q8NH63 302 aa11.65□□□□□ -0.55
TCOF1-213ENST00000514442 FOXB1Q99853 325 aa11.65□□□□□ -0.55
TCOF1-213ENST00000514442 LYRM2Q9NU23 88 aaPredicted RBP11.65□□□□□ -0.55
TCOF1-213ENST00000514442 RCL1Q9Y2P8 373 aaKnown RBP11.65□□□□□ -0.55
TCOF1-213ENST00000514442 A0A1W2PR80 420 aa11.64□□□□□ -0.55
TCOF1-213ENST00000514442 GEMIN2O14893 280 aaKnown RBP11.64□□□□□ -0.55
TCOF1-213ENST00000514442 AADACP22760 399 aa11.64□□□□□ -0.55
TCOF1-213ENST00000514442 GAMTQ14353 236 aa11.64□□□□□ -0.55
TCOF1-213ENST00000514442 MSMO1Q15800 293 aa11.64□□□□□ -0.55
TCOF1-213ENST00000514442 LCN15Q6UWW0 184 aa11.64□□□□□ -0.55
TCOF1-213ENST00000514442 WDR5BQ86VZ2 330 aa11.64□□□□□ -0.55
TCOF1-213ENST00000514442 SLC35G3Q8N808 338 aa11.64□□□□□ -0.55
TCOF1-213ENST00000514442 DEFB108BQ8NET1 73 aa11.64□□□□□ -0.55
TCOF1-213ENST00000514442 CT55Q8WUE5 264 aa11.64□□□□□ -0.55
TCOF1-213ENST00000514442 MS4A10Q96PG2 267 aa11.64□□□□□ -0.55
TCOF1-213ENST00000514442 RER1O15258 196 aa11.64□□□□□ -0.55
TCOF1-213ENST00000514442 SPRY1O43609 319 aaPredicted RBP11.64□□□□□ -0.55
TCOF1-213ENST00000514442 MPZL1O95297 269 aa11.64□□□□□ -0.55
TCOF1-213ENST00000514442 FABP6P51161 128 aa11.64□□□□□ -0.55
TCOF1-213ENST00000514442 HBG1P69891 147 aa11.64□□□□□ -0.55
TCOF1-213ENST00000514442 HBG2P69892 147 aa11.64□□□□□ -0.55
TCOF1-213ENST00000514442 RAB31Q13636 194 aa11.64□□□□□ -0.55
TCOF1-213ENST00000514442 ZNF766Q5HY98 468 aa11.64□□□□□ -0.55
TCOF1-213ENST00000514442 SLC36A1Q7Z2H8 476 aa11.64□□□□□ -0.55
TCOF1-213ENST00000514442 OR51A2Q8NGJ7 313 aa11.64□□□□□ -0.55
TCOF1-213ENST00000514442 IGHV5-10-1A0A0J9YXX1 117 aa11.64□□□□□ -0.55
TCOF1-213ENST00000514442 P2RY4P51582 365 aa11.64□□□□□ -0.55
TCOF1-213ENST00000514442 WDR38Q5JTN6 314 aa11.64□□□□□ -0.55
TCOF1-213ENST00000514442 WDR74Q6RFH5 385 aaPredicted RBP11.64□□□□□ -0.55
TCOF1-213ENST00000514442 GCNT2Q8N0V5 402 aa11.64□□□□□ -0.55
TCOF1-213ENST00000514442 ZNF586Q9NXT0 402 aa11.64□□□□□ -0.55
TCOF1-213ENST00000514442 WDR90Q96KV7 1748 aa11.64□□□□□ -0.55
TCOF1-213ENST00000514442 MED19A0JLT2 244 aaPredicted RBP11.64□□□□□ -0.55
TCOF1-213ENST00000514442 RNF212BA8MTL3 300 aa11.64□□□□□ -0.55
TCOF1-213ENST00000514442 MKRN2OSH3BPM6 223 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms