RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 VAMP8Q9BV40 100 aa11.67□□□□□ -0.54
PTPRF-215ENST00000496447 A0A1W2PQD3 144 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 A0A1W2PQF6 199 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 AKR1C3P42330 323 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 KCNJ3P48549 501 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 GAB4Q2WGN9 574 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 C4orf17Q53FE4 359 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 SPOCK3Q9BQ16 436 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 SF3B5Q9BWJ5 86 aaKnown RBP11.66□□□□□ -0.54
PTPRF-215ENST00000496447 PARD6AQ9NPB6 346 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 POMT1Q9Y6A1 747 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 PDGFBP01127 241 aaPredicted RBP11.66□□□□□ -0.54
PTPRF-215ENST00000496447 CDKN2AP42771 156 aaKnown RBP11.66□□□□□ -0.54
PTPRF-215ENST00000496447 GUK1Q16774 197 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 RPL7L1Q6DKI1 246 aaKnown RBP11.66□□□□□ -0.54
PTPRF-215ENST00000496447 MISP3Q96FF7 219 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 KLK11Q9UBX7 282 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 TRAV38-1A0A0B4J264 116 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 HNRNPA3P51991 378 aaKnown RBP11.66□□□□□ -0.54
PTPRF-215ENST00000496447 PMP22Q01453 160 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 ZNF90Q03938 601 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 ST3GAL2Q16842 350 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 ISXQ2M1V0 245 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 BTNL8Q6UX41 500 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 EML2O95834 649 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 SKP2Q13309 424 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 ZNF485Q8NCK3 441 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 OR8B3Q8NGG8 313 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 ARHGAP5-AS1Q96IT6 56 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 MOGAT1Q96PD6 335 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 OR8B2Q96RD0 313 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 LRFN3Q9BTN0 628 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 OR51I2Q9H344 312 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 TPPP2P59282 170 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 RTP5Q14D33 572 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 ARRDC1Q8N5I2 433 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 ASB10Q8WXI3 467 aa11.66□□□□□ -0.54
PTPRF-215ENST00000496447 TMEFF2Q9UIK5 374 aaPredicted RBP11.66□□□□□ -0.54
PTPRF-215ENST00000496447 ERRFI1Q9UJM3 462 aaPredicted RBP11.66□□□□□ -0.54
PTPRF-215ENST00000496447 OR5B21A6NL26 309 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 H3BP45 60 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 CCL21O00585 134 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 HYAL3O43820 417 aaPredicted RBP11.65□□□□□ -0.54
PTPRF-215ENST00000496447 MOSPD3O75425 235 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 CTLA4P16410 223 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 ASCL1P50553 236 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 MSRB3Q8IXL7 192 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 PPP1R1CQ8WVI7 109 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 IGHV3-43A0A0B4J1X8 118 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 IGHV3-43DP0DP04 118 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 CCL3P10147 92 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 FGF9P31371 208 aaPredicted RBP11.65□□□□□ -0.54
PTPRF-215ENST00000496447 ABLIM2Q6H8Q1 611 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 TMEM65Q6PI78 240 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 ZNF596Q8TC21 504 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 RPUSD4Q96CM3 377 aaKnown RBP11.65□□□□□ -0.54
PTPRF-215ENST00000496447 ELF5Q9UKW6 265 aaPredicted RBP11.65□□□□□ -0.54
PTPRF-215ENST00000496447 A0A1W2PRD5 423 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 A0A1W2PRF3 423 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 A0A1W2PRM7 423 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 CST2P09228 141 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 FBP1P09467 338 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 SLC25A4P12235 298 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 OPRK1P41145 380 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 LIMK1P53667 647 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 ENDOGQ14249 297 aaKnown RBP11.65□□□□□ -0.54
PTPRF-215ENST00000496447 FGF11Q92914 225 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 CXorf58Q96LI9 332 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 WDR54Q9H977 334 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 SIRT3Q9NTG7 399 aaPredicted RBP11.65□□□□□ -0.54
PTPRF-215ENST00000496447 MPC1Q9Y5U8 109 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 ZNF727A8MUV8 499 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 IGHV4-34P06331 123 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 OVCH2Q7RTZ1 564 aa11.65□□□□□ -0.54
PTPRF-215ENST00000496447 ZNF831Q5JPB2 1677 aa11.65□□□□□ -0.55
PTPRF-215ENST00000496447 UBE2L5PA0A1B0GUS4 154 aa11.65□□□□□ -0.55
PTPRF-215ENST00000496447 LIMS3P0CW19 117 aa11.65□□□□□ -0.55
PTPRF-215ENST00000496447 LIMS4P0CW20 117 aa11.65□□□□□ -0.55
PTPRF-215ENST00000496447 PLAC9Q5JTB6 97 aa11.65□□□□□ -0.55
PTPRF-215ENST00000496447 GPR137Q96N19 417 aa11.65□□□□□ -0.55
PTPRF-215ENST00000496447 SIRT5Q9NXA8 310 aa11.65□□□□□ -0.55
PTPRF-215ENST00000496447 MBD1Q9UIS9 605 aaPredicted RBP11.65□□□□□ -0.55
PTPRF-215ENST00000496447 MYO5AQ9Y4I1 1855 aaKnown RBP11.64□□□□□ -0.55
PTPRF-215ENST00000496447 MPZL1O95297 269 aa11.64□□□□□ -0.55
PTPRF-215ENST00000496447 PTTG1IPP53801 180 aa11.64□□□□□ -0.55
PTPRF-215ENST00000496447 ZNF273Q14593 569 aa11.64□□□□□ -0.55
PTPRF-215ENST00000496447 CD226Q15762 336 aa11.64□□□□□ -0.55
PTPRF-215ENST00000496447 TMEM128Q5BJH2 165 aa11.64□□□□□ -0.55
PTPRF-215ENST00000496447 PRR27Q6MZM9 219 aa11.64□□□□□ -0.55
PTPRF-215ENST00000496447 OR2M7Q8NG81 312 aa11.64□□□□□ -0.55
PTPRF-215ENST00000496447 VSTM2LQ96N03 204 aa11.64□□□□□ -0.55
PTPRF-215ENST00000496447 FAAP24Q9BTP7 215 aa11.64□□□□□ -0.55
PTPRF-215ENST00000496447 ADGRL4Q9HBW9 690 aa11.64□□□□□ -0.55
PTPRF-215ENST00000496447 TMEM218A2RU14 115 aa11.64□□□□□ -0.55
PTPRF-215ENST00000496447 LIPT2A6NK58 231 aa11.64□□□□□ -0.55
PTPRF-215ENST00000496447 SMIM17P0DL12 118 aa11.64□□□□□ -0.55
PTPRF-215ENST00000496447 PNLIPP16233 465 aa11.64□□□□□ -0.55
PTPRF-215ENST00000496447 HIST1H1DP16402 221 aaKnown RBP11.64□□□□□ -0.55
PTPRF-215ENST00000496447 ACSM6Q6P461 480 aa11.64□□□□□ -0.55
PTPRF-215ENST00000496447 OR5AP2Q8NGF4 316 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms