RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 KIAA1324LA8MWY0 1029 aaPredicted RBP13.67□□□□□ -0.22
PTPRF-206ENST00000429895 PLPP3O14495 311 aa13.67□□□□□ -0.22
PTPRF-206ENST00000429895 SRD5A2P31213 254 aa13.67□□□□□ -0.22
PTPRF-206ENST00000429895 SSBP1Q04837 148 aaKnown RBP13.67□□□□□ -0.22
PTPRF-206ENST00000429895 OR2W3Q7Z3T1 314 aa13.67□□□□□ -0.22
PTPRF-206ENST00000429895 MOGAT3Q86VF5 341 aa13.67□□□□□ -0.22
PTPRF-206ENST00000429895 PRSS3P2Q8NHM4 247 aa13.67□□□□□ -0.22
PTPRF-206ENST00000429895 ACTL6AO96019 429 aa13.67□□□□□ -0.22
PTPRF-206ENST00000429895 SLC25A1P53007 311 aa13.67□□□□□ -0.22
PTPRF-206ENST00000429895 DGAT2L7PQ6IED9 249 aa13.67□□□□□ -0.22
PTPRF-206ENST00000429895 TRAT1Q6PIZ9 186 aa13.67□□□□□ -0.22
PTPRF-206ENST00000429895 TUSC5Q8IXB3 177 aa13.67□□□□□ -0.22
PTPRF-206ENST00000429895 CT62P0C5K7 136 aa13.67□□□□□ -0.22
PTPRF-206ENST00000429895 CCL4P13236 92 aa13.67□□□□□ -0.22
PTPRF-206ENST00000429895 CD40P25942 277 aa13.67□□□□□ -0.22
PTPRF-206ENST00000429895 CD96P40200 585 aa13.67□□□□□ -0.22
PTPRF-206ENST00000429895 NKG7Q16617 165 aa13.67□□□□□ -0.22
PTPRF-206ENST00000429895 SLC25A30Q5SVS4 291 aa13.67□□□□□ -0.22
PTPRF-206ENST00000429895 TMEM37Q8WXS4 190 aa13.67□□□□□ -0.22
PTPRF-206ENST00000429895 RNF2Q99496 336 aa13.67□□□□□ -0.22
PTPRF-206ENST00000429895 TO15178 435 aa13.67□□□□□ -0.22
PTPRF-206ENST00000429895 CISD3P0C7P0 127 aa13.67□□□□□ -0.22
PTPRF-206ENST00000429895 KCNJ3P48549 501 aa13.67□□□□□ -0.22
PTPRF-206ENST00000429895 TIPARPQ7Z3E1 657 aaKnown RBP13.67□□□□□ -0.22
PTPRF-206ENST00000429895 ARRDC1Q8N5I2 433 aa13.67□□□□□ -0.22
PTPRF-206ENST00000429895 KCNK15Q9H427 330 aa13.67□□□□□ -0.22
PTPRF-206ENST00000429895 LSM11P83369 360 aaKnown RBP eCLIP13.66□□□□□ -0.22
PTPRF-206ENST00000429895 MRGPRX3Q96LB0 322 aa13.66□□□□□ -0.22
PTPRF-206ENST00000429895 SLC45A2Q9UMX9 530 aa13.66□□□□□ -0.22
PTPRF-206ENST00000429895 TRAV38-1A0A0B4J264 116 aa13.66□□□□□ -0.22
PTPRF-206ENST00000429895 CBY3A6NI87 242 aa13.66□□□□□ -0.22
PTPRF-206ENST00000429895 RNASEK-C17orf49H0YIS7 233 aa13.66□□□□□ -0.22
PTPRF-206ENST00000429895 FAM109BQ6ICB4 259 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-206ENST00000429895 APOBEC4Q8WW27 367 aaKnown RBP13.66□□□□□ -0.22
PTPRF-206ENST00000429895 RASL12Q9NYN1 266 aa13.66□□□□□ -0.22
PTPRF-206ENST00000429895 TEX50A0A1B0GTY4 177 aa13.66□□□□□ -0.22
PTPRF-206ENST00000429895 CDKN2AP42771 156 aaKnown RBP13.66□□□□□ -0.22
PTPRF-206ENST00000429895 C12orf73Q69YU5 71 aa13.66□□□□□ -0.22
PTPRF-206ENST00000429895 NHLRC1Q6VVB1 395 aa13.66□□□□□ -0.22
PTPRF-206ENST00000429895 OR4D10Q8NGI6 311 aa13.66□□□□□ -0.22
PTPRF-206ENST00000429895 FER1L6Q2WGJ9 1857 aa13.66□□□□□ -0.22
PTPRF-206ENST00000429895 J3QR89 54 aa13.66□□□□□ -0.22
PTPRF-206ENST00000429895 JMJD6Q6NYC1 403 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-206ENST00000429895 TCTE3Q8IZS6 198 aa13.66□□□□□ -0.22
PTPRF-206ENST00000429895 AMDHD2Q9Y303 409 aa13.66□□□□□ -0.22
PTPRF-206ENST00000429895 TUBAL3A6NHL2 446 aa13.66□□□□□ -0.22
PTPRF-206ENST00000429895 LANCL1O43813 399 aa13.66□□□□□ -0.22
PTPRF-206ENST00000429895 CRISPLD2Q9H0B8 497 aa13.66□□□□□ -0.22
PTPRF-206ENST00000429895 OR5V1Q9UGF6 321 aa13.66□□□□□ -0.22
PTPRF-206ENST00000429895 BTAF1O14981 1849 aa13.65□□□□□ -0.22
PTPRF-206ENST00000429895 PTBP3O95758 552 aaKnown RBP13.65□□□□□ -0.22
PTPRF-206ENST00000429895 EML2O95834 649 aa13.65□□□□□ -0.22
PTPRF-206ENST00000429895 OR5AC1P0C628 307 aa13.65□□□□□ -0.22
PTPRF-206ENST00000429895 RBPMS2Q6ZRY4 209 aaKnown RBP13.65□□□□□ -0.22
PTPRF-206ENST00000429895 ZG16BQ96DA0 208 aa13.65□□□□□ -0.22
PTPRF-206ENST00000429895 NQO2P16083 231 aa13.65□□□□□ -0.22
PTPRF-206ENST00000429895 HIST1H3AP68431 136 aa13.65□□□□□ -0.22
PTPRF-206ENST00000429895 GLDNQ6ZMI3 551 aaPredicted RBP13.65□□□□□ -0.22
PTPRF-206ENST00000429895 NRTNQ99748 197 aa13.65□□□□□ -0.22
PTPRF-206ENST00000429895 VAMP8Q9BV40 100 aa13.65□□□□□ -0.22
PTPRF-206ENST00000429895 CNTD2Q9H8S5 307 aa13.65□□□□□ -0.22
PTPRF-206ENST00000429895 WBP1LQ9NX94 342 aa13.65□□□□□ -0.22
PTPRF-206ENST00000429895 TCFL5Q9UL49 500 aa13.65□□□□□ -0.22
PTPRF-206ENST00000429895 IGHV3OR15-7A0A075B7D8 119 aa13.65□□□□□ -0.22
PTPRF-206ENST00000429895 PHOX2AO14813 284 aa13.65□□□□□ -0.22
PTPRF-206ENST00000429895 CAMPP49913 170 aa13.65□□□□□ -0.22
PTPRF-206ENST00000429895 ETFDHQ16134 617 aa13.65□□□□□ -0.22
PTPRF-206ENST00000429895 GUK1Q16774 197 aa13.65□□□□□ -0.22
PTPRF-206ENST00000429895 CBLN3Q6UW01 205 aa13.65□□□□□ -0.22
PTPRF-206ENST00000429895 OR5R1Q8NH85 324 aa13.65□□□□□ -0.22
PTPRF-206ENST00000429895 FAM60AQ9NP50 221 aa13.65□□□□□ -0.22
PTPRF-206ENST00000429895 TGOLN2O43493 480 aa13.65□□□□□ -0.22
PTPRF-206ENST00000429895 ZNF737O75373 536 aa13.65□□□□□ -0.22
PTPRF-206ENST00000429895 ALX3O95076 343 aa13.65□□□□□ -0.22
PTPRF-206ENST00000429895 BRS3P32247 399 aa13.65□□□□□ -0.22
PTPRF-206ENST00000429895 VWA1Q6PCB0 445 aa13.65□□□□□ -0.22
PTPRF-206ENST00000429895 OR2M3Q8NG83 312 aa13.65□□□□□ -0.22
PTPRF-206ENST00000429895 UQCC2Q9BRT2 126 aa13.65□□□□□ -0.22
PTPRF-206ENST00000429895 SAP30LQ9HAJ7 183 aa13.65□□□□□ -0.22
PTPRF-206ENST00000429895 BCL3P20749 454 aa13.65□□□□□ -0.23
PTPRF-206ENST00000429895 MRPS11P82912 194 aaKnown RBP13.65□□□□□ -0.23
PTPRF-206ENST00000429895 PPP1R1AQ13522 171 aa13.65□□□□□ -0.23
PTPRF-206ENST00000429895 KLHDC1Q8N7A1 406 aa13.65□□□□□ -0.23
PTPRF-206ENST00000429895 SIRT5Q9NXA8 310 aa13.65□□□□□ -0.23
PTPRF-206ENST00000429895 OR6C3Q9NZP0 311 aa13.65□□□□□ -0.23
PTPRF-206ENST00000429895 WASHC3Q9Y3C0 194 aa13.65□□□□□ -0.23
PTPRF-206ENST00000429895 TMED3Q9Y3Q3 217 aa13.65□□□□□ -0.23
PTPRF-206ENST00000429895 GABRA1P14867 456 aa13.64□□□□□ -0.23
PTPRF-206ENST00000429895 TOMM20LQ6UXN7 152 aa13.64□□□□□ -0.23
PTPRF-206ENST00000429895 DYNLRB2Q8TF09 96 aa13.64□□□□□ -0.23
PTPRF-206ENST00000429895 MED30Q96HR3 178 aa13.64□□□□□ -0.23
PTPRF-206ENST00000429895 IL20Q9NYY1 176 aa13.64□□□□□ -0.23
PTPRF-206ENST00000429895 MAP1LC3B2A6NCE7 125 aa13.64□□□□□ -0.23
PTPRF-206ENST00000429895 SFT2D2O95562 160 aa13.64□□□□□ -0.23
PTPRF-206ENST00000429895 RPEL1Q2QD12 228 aa13.64□□□□□ -0.23
PTPRF-206ENST00000429895 ZNF66Q6ZN08 573 aa13.64□□□□□ -0.23
PTPRF-206ENST00000429895 MAP1LC3BQ9GZQ8 125 aa13.64□□□□□ -0.23
PTPRF-206ENST00000429895 G6PCP35575 357 aa13.64□□□□□ -0.23
PTPRF-206ENST00000429895 SKP2Q13309 424 aa13.64□□□□□ -0.23
PTPRF-206ENST00000429895 LINC00052Q96N35 136 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 127.2 ms