RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 SCN1AP35498 2009 aa12.91□□□□□ -0.34
PTPRU-204ENST00000428026 CDKN2AP42771 156 aaKnown RBP12.91□□□□□ -0.34
PTPRU-204ENST00000428026 CEACAM16Q2WEN9 425 aa12.91□□□□□ -0.34
PTPRU-204ENST00000428026 TIMD4Q96H15 378 aa12.91□□□□□ -0.34
PTPRU-204ENST00000428026 DCAF16Q9NXF7 216 aa12.91□□□□□ -0.34
PTPRU-204ENST00000428026 KCNE1BA0A087WTH5 132 aa12.91□□□□□ -0.34
PTPRU-204ENST00000428026 C3orf85A0A1B0GTC6 90 aa12.91□□□□□ -0.34
PTPRU-204ENST00000428026 RBFOX3A6NFN3 312 aa12.91□□□□□ -0.34
PTPRU-204ENST00000428026 EPOPA6NHQ4 379 aa12.91□□□□□ -0.34
PTPRU-204ENST00000428026 DEFB108AA8MXU0 73 aa12.91□□□□□ -0.34
PTPRU-204ENST00000428026 ZNF25P17030 456 aaPredicted RBP12.91□□□□□ -0.34
PTPRU-204ENST00000428026 ZNF154Q13106 437 aa12.91□□□□□ -0.34
PTPRU-204ENST00000428026 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.91□□□□□ -0.34
PTPRU-204ENST00000428026 GDF15Q99988 308 aa12.91□□□□□ -0.34
PTPRU-204ENST00000428026 LSM2Q9Y333 95 aaKnown RBP12.91□□□□□ -0.34
PTPRU-204ENST00000428026 FIGNL2A6NMB9 653 aa12.9□□□□□ -0.34
PTPRU-204ENST00000428026 F12P00748 615 aaPredicted RBP12.9□□□□□ -0.34
PTPRU-204ENST00000428026 RPS23P62266 143 aaKnown RBP12.9□□□□□ -0.34
PTPRU-204ENST00000428026 NPAS1Q99742 590 aa12.9□□□□□ -0.34
PTPRU-204ENST00000428026 PRSS12P56730 875 aa12.9□□□□□ -0.34
PTPRU-204ENST00000428026 IFITM3Q01628 133 aa12.9□□□□□ -0.34
PTPRU-204ENST00000428026 TSPO2Q5TGU0 170 aa12.9□□□□□ -0.34
PTPRU-204ENST00000428026 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.9□□□□□ -0.34
PTPRU-204ENST00000428026 PP6455Q8WZ26 134 aa12.9□□□□□ -0.34
PTPRU-204ENST00000428026 RAB33BQ9H082 229 aa12.9□□□□□ -0.34
PTPRU-204ENST00000428026 A0A1W2PR80 420 aa12.9□□□□□ -0.34
PTPRU-204ENST00000428026 OR5AL1P0C617 328 aa12.9□□□□□ -0.34
PTPRU-204ENST00000428026 TSPAN32Q96QS1 320 aa12.9□□□□□ -0.34
PTPRU-204ENST00000428026 RGPD4Q7Z3J3 1758 aa12.9□□□□□ -0.34
PTPRU-204ENST00000428026 EPPINO95925 133 aa12.9□□□□□ -0.34
PTPRU-204ENST00000428026 HPP00738 406 aa12.9□□□□□ -0.34
PTPRU-204ENST00000428026 PTGFRP43088 359 aa12.9□□□□□ -0.34
PTPRU-204ENST00000428026 AMTP48728 403 aa12.9□□□□□ -0.34
PTPRU-204ENST00000428026 HMGA2P52926 109 aa12.9□□□□□ -0.34
PTPRU-204ENST00000428026 SLC25A1P53007 311 aa12.9□□□□□ -0.34
PTPRU-204ENST00000428026 POLR2GP62487 172 aaKnown RBP eCLIP12.9□□□□□ -0.34
PTPRU-204ENST00000428026 GUSBP11Q6P575 273 aa12.9□□□□□ -0.34
PTPRU-204ENST00000428026 TMEM230Q96A57 120 aa12.9□□□□□ -0.34
PTPRU-204ENST00000428026 ELOVL1Q9BW60 279 aa12.9□□□□□ -0.34
PTPRU-204ENST00000428026 CACNG5Q9UF02 275 aa12.9□□□□□ -0.34
PTPRU-204ENST00000428026 DOCK3Q8IZD9 2030 aa12.9□□□□□ -0.34
PTPRU-204ENST00000428026 TEX50A0A1B0GTY4 177 aa12.89□□□□□ -0.35
PTPRU-204ENST00000428026 C7orf77A4D0Y5 90 aa12.89□□□□□ -0.35
PTPRU-204ENST00000428026 M0R1X1 148 aa12.89□□□□□ -0.35
PTPRU-204ENST00000428026 GEMIN2O14893 280 aaKnown RBP12.89□□□□□ -0.35
PTPRU-204ENST00000428026 MPZL1O95297 269 aa12.89□□□□□ -0.35
PTPRU-204ENST00000428026 CAMPP49913 170 aa12.89□□□□□ -0.35
PTPRU-204ENST00000428026 DEFB109BQ30KR1 87 aa12.89□□□□□ -0.35
PTPRU-204ENST00000428026 ZNF426Q9BUY5 554 aa12.89□□□□□ -0.35
PTPRU-204ENST00000428026 NAA60Q9H7X0 242 aa12.89□□□□□ -0.35
PTPRU-204ENST00000428026 SLC2A9Q9NRM0 540 aa12.89□□□□□ -0.35
PTPRU-204ENST00000428026 SHROOM3Q8TF72 1996 aa12.89□□□□□ -0.35
PTPRU-204ENST00000428026 M0R1B8 84 aa12.89□□□□□ -0.35
PTPRU-204ENST00000428026 PRSS23O95084 383 aa12.89□□□□□ -0.35
PTPRU-204ENST00000428026 C1QAP02745 245 aa12.89□□□□□ -0.35
PTPRU-204ENST00000428026 INHBBP09529 407 aa12.89□□□□□ -0.35
PTPRU-204ENST00000428026 PCED1AQ9H1Q7 454 aa12.89□□□□□ -0.35
PTPRU-204ENST00000428026 ATG2BQ96BY7 2078 aa12.89□□□□□ -0.35
PTPRU-204ENST00000428026 SIGLEC5O15389 551 aa12.89□□□□□ -0.35
PTPRU-204ENST00000428026 CDC14BO60729 498 aa12.89□□□□□ -0.35
PTPRU-204ENST00000428026 CEACAM6P40199 344 aa12.89□□□□□ -0.35
PTPRU-204ENST00000428026 GNG4P50150 75 aa12.89□□□□□ -0.35
PTPRU-204ENST00000428026 ZNF117Q03924 483 aa12.89□□□□□ -0.35
PTPRU-204ENST00000428026 LINC00615Q96LM1 132 aaPredicted RBP12.89□□□□□ -0.35
PTPRU-204ENST00000428026 MENTQ9BUN1 341 aa12.89□□□□□ -0.35
PTPRU-204ENST00000428026 BET1LQ9NYM9 111 aa12.89□□□□□ -0.35
PTPRU-204ENST00000428026 FER1L6Q2WGJ9 1857 aa12.89□□□□□ -0.35
PTPRU-204ENST00000428026 PLXNB2O15031 1838 aa12.89□□□□□ -0.35
PTPRU-204ENST00000428026 ACAA1P09110 424 aaPredicted RBP12.89□□□□□ -0.35
PTPRU-204ENST00000428026 ZNF79Q15937 498 aa12.89□□□□□ -0.35
PTPRU-204ENST00000428026 ABI3BPQ7Z7G0 1075 aa12.89□□□□□ -0.35
PTPRU-204ENST00000428026 CPEB3Q8NE35 698 aaKnown RBP12.89□□□□□ -0.35
PTPRU-204ENST00000428026 MFRPQ9BY79 579 aa12.89□□□□□ -0.35
PTPRU-204ENST00000428026 LANCL1O43813 399 aa12.88□□□□□ -0.35
PTPRU-204ENST00000428026 SNCGO76070 127 aa12.88□□□□□ -0.35
PTPRU-204ENST00000428026 GP1BAP07359 652 aa12.88□□□□□ -0.35
PTPRU-204ENST00000428026 SMIM6P0DI80 62 aa12.88□□□□□ -0.35
PTPRU-204ENST00000428026 LPAR6P43657 344 aa12.88□□□□□ -0.35
PTPRU-204ENST00000428026 B2MP61769 119 aa12.88□□□□□ -0.35
PTPRU-204ENST00000428026 C19orf43Q9BQ61 176 aa12.88□□□□□ -0.35
PTPRU-204ENST00000428026 KIAA1217Q5T5P2 1943 aa12.88□□□□□ -0.35
PTPRU-204ENST00000428026 A0A1B0GTQ1 180 aa12.88□□□□□ -0.35
PTPRU-204ENST00000428026 LINC00862A6NCI5 91 aa12.88□□□□□ -0.35
PTPRU-204ENST00000428026 HEXAP06865 529 aa12.88□□□□□ -0.35
PTPRU-204ENST00000428026 ZGLP1P0C6A0 271 aa12.88□□□□□ -0.35
PTPRU-204ENST00000428026 PGA3P0DJD8 388 aa12.88□□□□□ -0.35
PTPRU-204ENST00000428026 RPL24P83731 157 aaKnown RBP12.88□□□□□ -0.35
PTPRU-204ENST00000428026 ZNF880Q6PDB4 577 aa12.88□□□□□ -0.35
PTPRU-204ENST00000428026 OR2M7Q8NG81 312 aa12.88□□□□□ -0.35
PTPRU-204ENST00000428026 OR10AD1Q8NGE0 317 aa12.88□□□□□ -0.35
PTPRU-204ENST00000428026 EDARADDQ8WWZ3 215 aa12.88□□□□□ -0.35
PTPRU-204ENST00000428026 ALG14Q96F25 216 aa12.88□□□□□ -0.35
PTPRU-204ENST00000428026 PRDM6Q9NQX0 595 aa12.88□□□□□ -0.35
PTPRU-204ENST00000428026 DNAJB12Q9NXW2 375 aaKnown RBP12.88□□□□□ -0.35
PTPRU-204ENST00000428026 IL17BQ9UHF5 180 aa12.88□□□□□ -0.35
PTPRU-204ENST00000428026 ZNF98A6NK75 572 aa12.88□□□□□ -0.35
PTPRU-204ENST00000428026 DYNLT3P51808 116 aa12.88□□□□□ -0.35
PTPRU-204ENST00000428026 TGIF2LXQ8IUE1 241 aa12.88□□□□□ -0.35
PTPRU-204ENST00000428026 OR1F12Q8NHA8 337 aa12.88□□□□□ -0.35
PTPRU-204ENST00000428026 RFESDQ8TAC1 157 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms