RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 Q96M85 177 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 GABRG3Q99928 467 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 SPTA1P02549 2419 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 ZGRF1Q86YA3 2104 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 TRAV1-2A0A0B4J238 106 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 NPIPB6E9PJ23 425 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 SRSF10O75494 262 aaKnown RBP11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 SLC19A1P41440 591 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 FAM3BP58499 235 aaPredicted RBP11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 IP6K3Q96PC2 410 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 RASL11BQ9BPW5 248 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 SOCS7O14512 581 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 HKR1P10072 659 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 IER3P46695 156 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 PRRX2Q99811 253 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 CTRCQ99895 268 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 TREX1Q9NSU2 369 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 PYCARD-AS1I3L0S3 204 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 DLK1P80370 383 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 AUNIPQ9H7T9 357 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 DUSP5Q16690 384 aa11.99□□□□□ -0.49
CCDC88A-204ENST00000413716 GNG10P50151 68 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 PTRH1Q86Y79 214 aaKnown RBP11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 PRELID3AQ96N28 172 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 EMC6Q9BV81 110 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 GSTZ1O43708 216 aaPredicted RBP11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 INSM1Q01101 510 aaPredicted RBP11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 UQCR10Q9UDW1 63 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 MMP17Q9ULZ9 603 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 WDR81Q562E7 1941 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 LAMB1P07942 1786 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 B4GALT3O60512 393 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 YPEL5P62699 121 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 GCSAMLQ5JQS6 135 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 OR52N5Q8NH56 324 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 CXCL12P48061 93 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 FOXO1Q12778 655 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 OR2Z1Q8NG97 314 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 ABHD3Q8WU67 409 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 PRSS37A4D1T9 235 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 K7EQS6 105 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 GEMIN2O14893 280 aaKnown RBP11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 CA3P07451 260 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 ZNF865P0CJ78 1059 aaPredicted RBP11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 HINT1P49773 126 aaPredicted RBP11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 ASCL1P50553 236 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 PNLIPRP2P54317 469 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 TMEFF1Q8IYR6 380 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 CACNG5Q9UF02 275 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 CES1P1Q9UKY3 287 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 CACNA1IQ9P0X4 2223 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 COL14A1Q05707 1796 aaKnown RBP11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 GABRA1P14867 456 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 IVDP26440 423 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 Q8WTZ3 238 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 OIT3Q8WWZ8 545 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 ISL2Q96A47 359 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 WFIKKN1Q96NZ8 548 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 JKAMPQ9P055 326 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 TMEM210A6NLX4 147 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 ZNF735P0CB33 412 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 CEACAM3P40198 252 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 MRM1Q6IN84 353 aaKnown RBP11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 LYPD8Q6UX82 237 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 FBXL14Q8N1E6 418 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 CXorf1O96002 111 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 DYNLT3P51808 116 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 MRPL58Q14197 206 aaKnown RBP11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 GLCCI1Q86VQ1 547 aa11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 ZNF418Q8TF45 676 aaPredicted RBP11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 KISS1RQ969F8 398 aaPredicted RBP11.98□□□□□ -0.49
CCDC88A-204ENST00000413716 IGHV4-34P06331 123 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 IL13RA2Q14627 380 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 TAS1R1Q7RTX1 841 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 BTLAQ7Z6A9 289 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 FUNDC1Q8IVP5 155 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 OR10V1Q8NGI7 309 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 TMEM70Q9BUB7 260 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 TMPRSS13Q9BYE2 586 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 ELAVL1Q15717 326 aaKnown RBP11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 TMEM64Q6YI46 380 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 RBM45Q8IUH3 476 aaKnown RBP11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 OR8D4Q8NGM9 314 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 APOBEC3DQ96AK3 386 aaPredicted RBP11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 OXGR1Q96P68 337 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 VN1R1Q9GZP7 353 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 HINT3Q9NQE9 182 aaKnown RBP11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 SLC17A2O00624 439 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 PPIAP62937 165 aaKnown RBP11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 HFEQ30201 348 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 MRPL54Q6P161 138 aaKnown RBP11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 OR8I2Q8N0Y5 310 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 CXorf36Q9H7Y0 433 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 NDUFS8O00217 210 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 ST6GAL1P15907 406 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 ZNF683Q8IZ20 524 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 SLC17A5Q9NRA2 495 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 ELFN2Q5R3F8 820 aa11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 FAHD2BQ6P2I3 314 aaPredicted RBP11.97□□□□□ -0.49
CCDC88A-204ENST00000413716 PP6455Q8WZ26 134 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms