RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 IGKV1-9A0A0C4DH69 117 aa11.48□□□□□ -0.57
LIMS1-204ENST00000409441 C5orf63A6NC05 138 aa11.48□□□□□ -0.57
LIMS1-204ENST00000409441 SMPD2O60906 423 aa11.48□□□□□ -0.57
LIMS1-204ENST00000409441 GOSR1O95249 250 aa11.48□□□□□ -0.57
LIMS1-204ENST00000409441 RLN1P04808 185 aa11.48□□□□□ -0.57
LIMS1-204ENST00000409441 ZNF735P0CB33 412 aa11.48□□□□□ -0.57
LIMS1-204ENST00000409441 VSIG10L2P0DP72 767 aa11.48□□□□□ -0.57
LIMS1-204ENST00000409441 RAP2BP61225 183 aa11.48□□□□□ -0.57
LIMS1-204ENST00000409441 NKX6-1P78426 367 aaPredicted RBP11.48□□□□□ -0.57
LIMS1-204ENST00000409441 PNLIPRP3Q17RR3 467 aa11.48□□□□□ -0.57
LIMS1-204ENST00000409441 GFOD2Q3B7J2 385 aa11.48□□□□□ -0.57
LIMS1-204ENST00000409441 SNAI3Q3KNW1 292 aa11.48□□□□□ -0.57
LIMS1-204ENST00000409441 HIST2H2BCQ6DN03 193 aa11.48□□□□□ -0.57
LIMS1-204ENST00000409441 TRAPPC6BQ86SZ2 158 aa11.48□□□□□ -0.57
LIMS1-204ENST00000409441 ZNF295-AS1Q8N0V1 137 aa11.48□□□□□ -0.57
LIMS1-204ENST00000409441 NUP37Q8NFH4 326 aa11.48□□□□□ -0.57
LIMS1-204ENST00000409441 OR5L1Q8NGL2 311 aa11.48□□□□□ -0.57
LIMS1-204ENST00000409441 OR1J1Q8NGS3 322 aa11.48□□□□□ -0.57
LIMS1-204ENST00000409441 OR8S1Q8NH09 359 aa11.48□□□□□ -0.57
LIMS1-204ENST00000409441 LILRB1Q8NHL6 650 aaPredicted RBP11.48□□□□□ -0.57
LIMS1-204ENST00000409441 DVL3Q92997 716 aaPredicted RBP11.48□□□□□ -0.57
LIMS1-204ENST00000409441 GPER1Q99527 375 aa11.48□□□□□ -0.57
LIMS1-204ENST00000409441 URM1Q9BTM9 101 aaKnown RBP11.48□□□□□ -0.57
LIMS1-204ENST00000409441 BCL2L14Q9BZR8 327 aa11.48□□□□□ -0.57
LIMS1-204ENST00000409441 E7EQL1 145 aa11.47□□□□□ -0.57
LIMS1-204ENST00000409441 CDC14BO60729 498 aa11.47□□□□□ -0.57
LIMS1-204ENST00000409441 OR2A4O95047 310 aa11.47□□□□□ -0.57
LIMS1-204ENST00000409441 AMY2AP04746 511 aa11.47□□□□□ -0.57
LIMS1-204ENST00000409441 ANOS1P23352 680 aa11.47□□□□□ -0.57
LIMS1-204ENST00000409441 GLRXP35754 106 aa11.47□□□□□ -0.57
LIMS1-204ENST00000409441 OR3A4PP47883 348 aa11.47□□□□□ -0.57
LIMS1-204ENST00000409441 ERVS71-1P61550 626 aa11.47□□□□□ -0.57
LIMS1-204ENST00000409441 PPP1CBP62140 327 aa11.47□□□□□ -0.57
LIMS1-204ENST00000409441 VHLLQ6RSH7 139 aa11.47□□□□□ -0.57
LIMS1-204ENST00000409441 IDO2Q6ZQW0 420 aa11.47□□□□□ -0.57
LIMS1-204ENST00000409441 RFPL4BQ6ZWI9 263 aa11.47□□□□□ -0.57
LIMS1-204ENST00000409441 C1orf174Q8IYL3 243 aa11.47□□□□□ -0.57
LIMS1-204ENST00000409441 SLC7A5P1Q8MH63 180 aa11.47□□□□□ -0.57
LIMS1-204ENST00000409441 BPIFB2Q8N4F0 458 aa11.47□□□□□ -0.57
LIMS1-204ENST00000409441 OR56B1Q8NGI3 324 aa11.47□□□□□ -0.57
LIMS1-204ENST00000409441 SGK3Q96BR1 496 aa11.47□□□□□ -0.57
LIMS1-204ENST00000409441 CPNE2Q96FN4 548 aaPredicted RBP11.47□□□□□ -0.57
LIMS1-204ENST00000409441 OR2A7Q96R45 310 aa11.47□□□□□ -0.57
LIMS1-204ENST00000409441 PRRT1Q99946 306 aa11.47□□□□□ -0.57
LIMS1-204ENST00000409441 TMEM59Q9BXS4 323 aa11.47□□□□□ -0.57
LIMS1-204ENST00000409441 CST11Q9H112 138 aa11.47□□□□□ -0.57
LIMS1-204ENST00000409441 CA10Q9NS85 328 aa11.47□□□□□ -0.57
LIMS1-204ENST00000409441 CISD1Q9NZ45 108 aaKnown RBP11.47□□□□□ -0.57
LIMS1-204ENST00000409441 ANAPC10Q9UM13 185 aa11.47□□□□□ -0.57
LIMS1-204ENST00000409441 A0A1W2PPR1 153 aa11.46□□□□□ -0.57
LIMS1-204ENST00000409441 TMEM82A0PJX8 343 aa11.46□□□□□ -0.57
LIMS1-204ENST00000409441 J3QW42 95 aa11.46□□□□□ -0.57
LIMS1-204ENST00000409441 AKR7A2O43488 359 aa11.46□□□□□ -0.57
LIMS1-204ENST00000409441 MPIG6BO95866 241 aa11.46□□□□□ -0.57
LIMS1-204ENST00000409441 NAT2P11245 290 aa11.46□□□□□ -0.57
LIMS1-204ENST00000409441 TUBG1P23258 451 aa11.46□□□□□ -0.57
LIMS1-204ENST00000409441 FABP6P51161 128 aa11.46□□□□□ -0.57
LIMS1-204ENST00000409441 DHODHQ02127 395 aa11.46□□□□□ -0.57
LIMS1-204ENST00000409441 KISS1Q15726 138 aa11.46□□□□□ -0.57
LIMS1-204ENST00000409441 MPPED2Q15777 294 aa11.46□□□□□ -0.57
LIMS1-204ENST00000409441 ZNF672Q499Z4 452 aaPredicted RBP11.46□□□□□ -0.57
LIMS1-204ENST00000409441 RNASE10Q5GAN6 216 aaKnown RBP11.46□□□□□ -0.57
LIMS1-204ENST00000409441 SPATA46Q5T0L3 261 aa11.46□□□□□ -0.57
LIMS1-204ENST00000409441 OR11H4Q8NGC9 324 aa11.46□□□□□ -0.57
LIMS1-204ENST00000409441 OR2T35Q8NGX2 323 aa11.46□□□□□ -0.57
LIMS1-204ENST00000409441 SLC25A40Q8TBP6 338 aa11.46□□□□□ -0.57
LIMS1-204ENST00000409441 TMEM171Q8WVE6 324 aa11.46□□□□□ -0.57
LIMS1-204ENST00000409441 OR2J1Q9GZK6 312 aa11.46□□□□□ -0.57
LIMS1-204ENST00000409441 TINAGL1Q9GZM7 467 aaPredicted RBP11.46□□□□□ -0.57
LIMS1-204ENST00000409441 ZMAT3Q9HA38 289 aaKnown RBP11.46□□□□□ -0.57
LIMS1-204ENST00000409441 IFT46Q9NQC8 304 aa11.46□□□□□ -0.57
LIMS1-204ENST00000409441 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.46□□□□□ -0.57
LIMS1-204ENST00000409441 TUBG2Q9NRH3 451 aa11.46□□□□□ -0.57
LIMS1-204ENST00000409441 PIGLQ9Y2B2 252 aa11.46□□□□□ -0.57
LIMS1-204ENST00000409441 PLEKHA6Q9Y2H5 1048 aa11.46□□□□□ -0.57
LIMS1-204ENST00000409441 ABCA4P78363 2273 aa11.46□□□□□ -0.57
LIMS1-204ENST00000409441 VSTM5A8MXK1 200 aa11.46□□□□□ -0.58
LIMS1-204ENST00000409441 M0QYG6 137 aa11.46□□□□□ -0.58
LIMS1-204ENST00000409441 NAT1P18440 290 aa11.46□□□□□ -0.58
LIMS1-204ENST00000409441 C4BPBP20851 252 aa11.46□□□□□ -0.58
LIMS1-204ENST00000409441 CBX5P45973 191 aa11.46□□□□□ -0.58
LIMS1-204ENST00000409441 GNG2P59768 71 aa11.46□□□□□ -0.58
LIMS1-204ENST00000409441 SNRPD2P62316 118 aaKnown RBP11.46□□□□□ -0.58
LIMS1-204ENST00000409441 TLE4Q04727 773 aa11.46□□□□□ -0.58
LIMS1-204ENST00000409441 MALLQ13021 153 aa11.46□□□□□ -0.58
LIMS1-204ENST00000409441 ARL6IP1Q15041 203 aa11.46□□□□□ -0.58
LIMS1-204ENST00000409441 ACTBL2Q562R1 376 aa11.46□□□□□ -0.58
LIMS1-204ENST00000409441 RGS7BPQ6MZT1 257 aaPredicted RBP11.46□□□□□ -0.58
LIMS1-204ENST00000409441 FAM89BQ8N5H3 189 aa11.46□□□□□ -0.58
LIMS1-204ENST00000409441 ZDHHC22Q8N966 263 aa11.46□□□□□ -0.58
LIMS1-204ENST00000409441 SEMA6DQ8NFY4 1073 aa11.46□□□□□ -0.58
LIMS1-204ENST00000409441 SPSB1Q96BD6 273 aa11.46□□□□□ -0.58
LIMS1-204ENST00000409441 CMBLQ96DG6 245 aa11.46□□□□□ -0.58
LIMS1-204ENST00000409441 RAB3CQ96E17 227 aa11.46□□□□□ -0.58
LIMS1-204ENST00000409441 C14orf79Q96F83 325 aa11.46□□□□□ -0.58
LIMS1-204ENST00000409441 MARS2Q96GW9 593 aaKnown RBP11.46□□□□□ -0.58
LIMS1-204ENST00000409441 SPACA5Q96QH8 159 aa11.46□□□□□ -0.58
LIMS1-204ENST00000409441 TMPRSS13Q9BYE2 586 aa11.46□□□□□ -0.58
LIMS1-204ENST00000409441 SELENOIQ9C0D9 397 aa11.46□□□□□ -0.58
LIMS1-204ENST00000409441 CLEC4MQ9H2X3 399 aaPredicted RBP11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms