RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 STOML3Q8TAV4 291 aa12.4□□□□□ -0.42
HMGA1-203ENST00000374116 OR51E1Q8TCB6 317 aa12.4□□□□□ -0.42
HMGA1-203ENST00000374116 EDARADDQ8WWZ3 215 aa12.4□□□□□ -0.42
HMGA1-203ENST00000374116 CPNE4Q96A23 557 aaPredicted RBP12.4□□□□□ -0.42
HMGA1-203ENST00000374116 VKORC1Q9BQB6 163 aa12.4□□□□□ -0.42
HMGA1-203ENST00000374116 CALHM2Q9HA72 323 aa12.4□□□□□ -0.42
HMGA1-203ENST00000374116 PNRC2Q9NPJ4 139 aaKnown RBP12.4□□□□□ -0.42
HMGA1-203ENST00000374116 FBLN5Q9UBX5 448 aa12.4□□□□□ -0.42
HMGA1-203ENST00000374116 MIOXQ9UGB7 285 aa12.4□□□□□ -0.42
HMGA1-203ENST00000374116 HELZ2Q9BYK8 2649 aaKnown RBP12.4□□□□□ -0.43
HMGA1-203ENST00000374116 COLCA2A8K830 154 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 SCGNO76038 276 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 CD79AP11912 226 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 PTAFRP25105 342 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 CTSSP25774 331 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 CSNK1A1P48729 337 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 ZNF121P58317 390 aaPredicted RBP12.39□□□□□ -0.43
HMGA1-203ENST00000374116 PDZK1IP1Q13113 114 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 C4orf17Q53FE4 359 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 LY6G6FQ5SQ64 297 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 IL34Q6ZMJ4 242 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 TUSC5Q8IXB3 177 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 C15orf54Q8N8G6 183 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 OR9K2Q8NGE7 335 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 OR52N4Q8NGI2 321 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 ARL11Q969Q4 196 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 FAM46BQ96A09 425 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 ZNF385AQ96PM9 386 aaKnown RBP12.39□□□□□ -0.43
HMGA1-203ENST00000374116 WDR13Q9H1Z4 485 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 UPB1Q9UBR1 384 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 SLC5A6Q9Y289 635 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 MBD3L4A6NDZ8 208 aaPredicted RBP12.39□□□□□ -0.43
HMGA1-203ENST00000374116 MBD3L3A6NE82 208 aaPredicted RBP12.39□□□□□ -0.43
HMGA1-203ENST00000374116 MBD3L5A6NJ08 208 aaPredicted RBP12.39□□□□□ -0.43
HMGA1-203ENST00000374116 RER1O15258 196 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 IL2RAP01589 272 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 RLN1P04808 185 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 CCL1P22362 96 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 CX3CR1P49238 355 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 PRKXP51817 358 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 LUMP51884 338 aaPredicted RBP12.39□□□□□ -0.43
HMGA1-203ENST00000374116 PHYHD1Q5SRE7 291 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 VWA1Q6PCB0 445 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 CNEP1R1Q8N9A8 125 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 OR8B12Q8NGG6 310 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 OR8S1Q8NH09 359 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 MBD3L2Q8NHZ7 208 aaPredicted RBP12.39□□□□□ -0.43
HMGA1-203ENST00000374116 C2CD4CQ8TF44 421 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 CCDC107Q8WV48 283 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 TNFAIP8L1Q8WVP5 186 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 WNT2BQ93097 391 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 SF3B5Q9BWJ5 86 aaKnown RBP12.39□□□□□ -0.43
HMGA1-203ENST00000374116 PAPOLGQ9BWT3 736 aaKnown RBP12.39□□□□□ -0.43
HMGA1-203ENST00000374116 FOXD3Q9UJU5 478 aaPredicted RBP12.39□□□□□ -0.43
HMGA1-203ENST00000374116 DMRT1Q9Y5R6 373 aa12.39□□□□□ -0.43
HMGA1-203ENST00000374116 USP9XQ93008 2570 aaPredicted RBP12.38□□□□□ -0.43
HMGA1-203ENST00000374116 FREM1Q5H8C1 2179 aa12.38□□□□□ -0.43
HMGA1-203ENST00000374116 AGFG2O95081 481 aa12.38□□□□□ -0.43
HMGA1-203ENST00000374116 RAB3DO95716 219 aa12.38□□□□□ -0.43
HMGA1-203ENST00000374116 CYB5AP00167 134 aa12.38□□□□□ -0.43
HMGA1-203ENST00000374116 CD74P04233 296 aa12.38□□□□□ -0.43
HMGA1-203ENST00000374116 MSR1P21757 451 aa12.38□□□□□ -0.43
HMGA1-203ENST00000374116 BMP5P22003 454 aa12.38□□□□□ -0.43
HMGA1-203ENST00000374116 NTF4P34130 210 aa12.38□□□□□ -0.43
HMGA1-203ENST00000374116 PTGER4P35408 488 aa12.38□□□□□ -0.43
HMGA1-203ENST00000374116 GSK3AP49840 483 aa12.38□□□□□ -0.43
HMGA1-203ENST00000374116 SNRPEP62304 92 aaKnown RBP12.38□□□□□ -0.43
HMGA1-203ENST00000374116 BLOC1S1P78537 153 aa12.38□□□□□ -0.43
HMGA1-203ENST00000374116 QRFPP83859 136 aa12.38□□□□□ -0.43
HMGA1-203ENST00000374116 PEA15Q15121 130 aa12.38□□□□□ -0.43
HMGA1-203ENST00000374116 SGCAQ16586 387 aa12.38□□□□□ -0.43
HMGA1-203ENST00000374116 MOGAT2Q3SYC2 334 aa12.38□□□□□ -0.43
HMGA1-203ENST00000374116 OR10K2Q6IF99 312 aa12.38□□□□□ -0.43
HMGA1-203ENST00000374116 DOK3Q7L591 496 aa12.38□□□□□ -0.43
HMGA1-203ENST00000374116 OR13C9Q8NGT0 318 aa12.38□□□□□ -0.43
HMGA1-203ENST00000374116 AQP3Q92482 292 aa12.38□□□□□ -0.43
HMGA1-203ENST00000374116 RND1Q92730 232 aa12.38□□□□□ -0.43
HMGA1-203ENST00000374116 DVL3Q92997 716 aaPredicted RBP12.38□□□□□ -0.43
HMGA1-203ENST00000374116 GAL3ST1Q99999 423 aa12.38□□□□□ -0.43
HMGA1-203ENST00000374116 SLC25A21Q9BQT8 299 aaPredicted RBP12.38□□□□□ -0.43
HMGA1-203ENST00000374116 NUDT16L1Q9BRJ7 211 aaKnown RBP12.38□□□□□ -0.43
HMGA1-203ENST00000374116 NELFAQ9H3P2 528 aa12.38□□□□□ -0.43
HMGA1-203ENST00000374116 C12orf49Q9H741 205 aa12.38□□□□□ -0.43
HMGA1-203ENST00000374116 PLEKHA6Q9Y2H5 1048 aa12.38□□□□□ -0.43
HMGA1-203ENST00000374116 C1orf196B1AJZ1 125 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 NDUFS6O75380 124 aaKnown RBP12.37□□□□□ -0.43
HMGA1-203ENST00000374116 TIMP3P35625 211 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 ZNF93P35789 620 aaPredicted RBP12.37□□□□□ -0.43
HMGA1-203ENST00000374116 NPBWR1P48145 328 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 ZNF260Q3ZCT1 412 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 C11orf87Q6NUJ2 197 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 ACOT7LQ6ZUV0 252 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 ABHD12BQ7Z5M8 362 aaPredicted RBP12.37□□□□□ -0.43
HMGA1-203ENST00000374116 COMMD2Q86X83 199 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 MCEMP1Q8IX19 187 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 PAQR4Q8N4S7 273 aaPredicted RBP12.37□□□□□ -0.43
HMGA1-203ENST00000374116 ZNF283Q8N7M2 679 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 GJC3Q8NFK1 279 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 OR5M8Q8NGP6 311 aa12.37□□□□□ -0.43
HMGA1-203ENST00000374116 GPR84Q9NQS5 396 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms