RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 PTTG1IPP53801 180 aa12.04□□□□□ -0.48
SF3A1-201ENST00000215793 TMEM241Q24JQ0 296 aa12.04□□□□□ -0.48
SF3A1-201ENST00000215793 PWWP2BQ6NUJ5 590 aa12.04□□□□□ -0.48
SF3A1-201ENST00000215793 OR2Y1Q8NGV0 311 aa12.04□□□□□ -0.48
SF3A1-201ENST00000215793 C10orf35Q96D05 121 aa12.04□□□□□ -0.48
SF3A1-201ENST00000215793 NOL4LQ96MY1 436 aaPredicted RBP12.04□□□□□ -0.48
SF3A1-201ENST00000215793 MRM2Q9UI43 246 aaKnown RBP12.04□□□□□ -0.48
SF3A1-201ENST00000215793 SCO1O75880 301 aa12.03□□□□□ -0.48
SF3A1-201ENST00000215793 BMP5P22003 454 aa12.03□□□□□ -0.48
SF3A1-201ENST00000215793 RHOBP62745 196 aa12.03□□□□□ -0.48
SF3A1-201ENST00000215793 FAM219BQ5XKK7 198 aa12.03□□□□□ -0.48
SF3A1-201ENST00000215793 ABHD1Q96SE0 405 aa12.03□□□□□ -0.48
SF3A1-201ENST00000215793 OGG1O15527 345 aa12.03□□□□□ -0.48
SF3A1-201ENST00000215793 ANKRD34CP0C6C1 535 aa12.03□□□□□ -0.48
SF3A1-201ENST00000215793 TNFAIP6P98066 277 aaPredicted RBP12.03□□□□□ -0.48
SF3A1-201ENST00000215793 MRM1Q6IN84 353 aaKnown RBP12.03□□□□□ -0.48
SF3A1-201ENST00000215793 ZNF66Q6ZN08 573 aa12.03□□□□□ -0.48
SF3A1-201ENST00000215793 PRSS42Q7Z5A4 293 aa12.03□□□□□ -0.48
SF3A1-201ENST00000215793 ANGPTL6Q8NI99 470 aa12.03□□□□□ -0.48
SF3A1-201ENST00000215793 TOLLIPQ9H0E2 274 aa12.03□□□□□ -0.48
SF3A1-201ENST00000215793 SPTA1P02549 2419 aa12.03□□□□□ -0.48
SF3A1-201ENST00000215793 PHOX2AO14813 284 aa12.03□□□□□ -0.48
SF3A1-201ENST00000215793 CTDSPLO15194 276 aa12.03□□□□□ -0.48
SF3A1-201ENST00000215793 ISXQ2M1V0 245 aa12.03□□□□□ -0.48
SF3A1-201ENST00000215793 VSTM2LQ96N03 204 aa12.03□□□□□ -0.48
SF3A1-201ENST00000215793 TRAPPC1Q9Y5R8 145 aa12.03□□□□□ -0.48
SF3A1-201ENST00000215793 OR2M5A3KFT3 312 aa12.03□□□□□ -0.48
SF3A1-201ENST00000215793 LANCL1O43813 399 aa12.03□□□□□ -0.48
SF3A1-201ENST00000215793 CTSDP07339 412 aaPredicted RBP12.03□□□□□ -0.48
SF3A1-201ENST00000215793 INHBBP09529 407 aa12.03□□□□□ -0.48
SF3A1-201ENST00000215793 GNG10P50151 68 aa12.03□□□□□ -0.48
SF3A1-201ENST00000215793 TMEM267Q0VDI3 215 aaPredicted RBP12.03□□□□□ -0.48
SF3A1-201ENST00000215793 MOGAT2Q3SYC2 334 aa12.03□□□□□ -0.48
SF3A1-201ENST00000215793 Q56UQ5 140 aa12.03□□□□□ -0.48
SF3A1-201ENST00000215793 TMEM211Q6ICI0 200 aa12.03□□□□□ -0.48
SF3A1-201ENST00000215793 LIAT1Q6ZQX7 453 aa12.03□□□□□ -0.48
SF3A1-201ENST00000215793 TM4SF19Q96DZ7 209 aa12.03□□□□□ -0.48
SF3A1-201ENST00000215793 RBM38Q9H0Z9 239 aaKnown RBP12.03□□□□□ -0.48
SF3A1-201ENST00000215793 LHX9Q9NQ69 397 aa12.03□□□□□ -0.48
SF3A1-201ENST00000215793 ONECUT1Q9UBC0 465 aa12.03□□□□□ -0.48
SF3A1-201ENST00000215793 MBTPS2O43462 519 aa12.02□□□□□ -0.48
SF3A1-201ENST00000215793 CEACAM3P40198 252 aa12.02□□□□□ -0.48
SF3A1-201ENST00000215793 PRRX1P54821 245 aa12.02□□□□□ -0.48
SF3A1-201ENST00000215793 SKP2Q13309 424 aa12.02□□□□□ -0.48
SF3A1-201ENST00000215793 ATG4DQ86TL0 474 aaPredicted RBP12.02□□□□□ -0.48
SF3A1-201ENST00000215793 CXXC4Q9H2H0 198 aa12.02□□□□□ -0.48
SF3A1-201ENST00000215793 MYH14Q7Z406 1995 aaKnown RBP12.02□□□□□ -0.48
SF3A1-201ENST00000215793 RP1P56715 2156 aa12.02□□□□□ -0.48
SF3A1-201ENST00000215793 NPIPB8E9PQR5 432 aa12.02□□□□□ -0.49
SF3A1-201ENST00000215793 PSG6Q00889 435 aa12.02□□□□□ -0.49
SF3A1-201ENST00000215793 VAMP3Q15836 100 aa12.02□□□□□ -0.49
SF3A1-201ENST00000215793 C16orf47Q6ZP98 133 aaPredicted RBP12.02□□□□□ -0.49
SF3A1-201ENST00000215793 ASB10Q8WXI3 467 aa12.02□□□□□ -0.49
SF3A1-201ENST00000215793 RASL10BQ96S79 203 aa12.02□□□□□ -0.49
SF3A1-201ENST00000215793 OR2D2Q9H210 308 aa12.02□□□□□ -0.49
SF3A1-201ENST00000215793 A0A1W2PR80 420 aa12.02□□□□□ -0.49
SF3A1-201ENST00000215793 OR5AC1P0C628 307 aa12.02□□□□□ -0.49
SF3A1-201ENST00000215793 GABRA1P14867 456 aa12.02□□□□□ -0.49
SF3A1-201ENST00000215793 CLPPQ16740 277 aaPredicted RBP12.02□□□□□ -0.49
SF3A1-201ENST00000215793 DHRS7BQ6IAN0 325 aaPredicted RBP12.02□□□□□ -0.49
SF3A1-201ENST00000215793 VSTM2AQ8TAG5 236 aa12.02□□□□□ -0.49
SF3A1-201ENST00000215793 GPR87Q9BY21 358 aa12.02□□□□□ -0.49
SF3A1-201ENST00000215793 ESRP2Q9H6T0 727 aaKnown RBP12.02□□□□□ -0.49
SF3A1-201ENST00000215793 DEFB108AA8MXU0 73 aa12.02□□□□□ -0.49
SF3A1-201ENST00000215793 GSTZ1O43708 216 aaPredicted RBP12.02□□□□□ -0.49
SF3A1-201ENST00000215793 SPEM2Q0P670 501 aa12.02□□□□□ -0.49
SF3A1-201ENST00000215793 IL24Q13007 206 aa12.02□□□□□ -0.49
SF3A1-201ENST00000215793 C1orf210Q8IVY1 113 aa12.02□□□□□ -0.49
SF3A1-201ENST00000215793 AMMECR1Q9Y4X0 333 aaPredicted RBP12.02□□□□□ -0.49
SF3A1-201ENST00000215793 FAM24AA6NFZ4 105 aa12.01□□□□□ -0.49
SF3A1-201ENST00000215793 K7EQS6 105 aa12.01□□□□□ -0.49
SF3A1-201ENST00000215793 TNFSF14O43557 240 aa12.01□□□□□ -0.49
SF3A1-201ENST00000215793 LYZL6O75951 148 aa12.01□□□□□ -0.49
SF3A1-201ENST00000215793 GOSR1O95249 250 aa12.01□□□□□ -0.49
SF3A1-201ENST00000215793 NQO2P16083 231 aa12.01□□□□□ -0.49
SF3A1-201ENST00000215793 OR3A1P47881 315 aa12.01□□□□□ -0.49
SF3A1-201ENST00000215793 CDC34P49427 236 aaPredicted RBP12.01□□□□□ -0.49
SF3A1-201ENST00000215793 ACSM6Q6P461 480 aa12.01□□□□□ -0.49
SF3A1-201ENST00000215793 WDR74Q6RFH5 385 aaPredicted RBP12.01□□□□□ -0.49
SF3A1-201ENST00000215793 CLEC9AQ6UXN8 241 aa12.01□□□□□ -0.49
SF3A1-201ENST00000215793 TMPRSS13Q9BYE2 586 aa12.01□□□□□ -0.49
SF3A1-201ENST00000215793 POMT1Q9Y6A1 747 aa12.01□□□□□ -0.49
SF3A1-201ENST00000215793 OR8B12Q8NGG6 310 aa12.01□□□□□ -0.49
SF3A1-201ENST00000215793 CCL17Q92583 94 aa12.01□□□□□ -0.49
SF3A1-201ENST00000215793 ZNF426Q9BUY5 554 aa12.01□□□□□ -0.49
SF3A1-201ENST00000215793 WDR13Q9H1Z4 485 aa12.01□□□□□ -0.49
SF3A1-201ENST00000215793 FBXL17Q9UF56 701 aa12.01□□□□□ -0.49
SF3A1-201ENST00000215793 ANXA10Q9UJ72 324 aa12.01□□□□□ -0.49
SF3A1-201ENST00000215793 YBX2Q9Y2T7 364 aaKnown RBP12.01□□□□□ -0.49
SF3A1-201ENST00000215793 LIPT2A6NK58 231 aa12.01□□□□□ -0.49
SF3A1-201ENST00000215793 RPL13AP40429 203 aaKnown RBP12.01□□□□□ -0.49
SF3A1-201ENST00000215793 COL19A1Q14993 1142 aa12.01□□□□□ -0.49
SF3A1-201ENST00000215793 MISP3Q96FF7 219 aa12.01□□□□□ -0.49
SF3A1-201ENST00000215793 SLC26A1Q9H2B4 701 aa12.01□□□□□ -0.49
SF3A1-201ENST00000215793 NAT8BQ9UHF3 227 aa12.01□□□□□ -0.49
SF3A1-201ENST00000215793 ZMIZ1Q9ULJ6 1067 aa12.01□□□□□ -0.49
SF3A1-201ENST00000215793 MPZL1O95297 269 aa12.01□□□□□ -0.49
SF3A1-201ENST00000215793 SLC25A5P05141 298 aaKnown RBP12.01□□□□□ -0.49
SF3A1-201ENST00000215793 CELA2BP08218 269 aaPredicted RBP12.01□□□□□ -0.49
SF3A1-201ENST00000215793 ASCL1P50553 236 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms