RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 UBQLN3Q9H347 655 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 WDR54Q9H977 334 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 PIPOXQ9P0Z9 390 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 DOPEY2Q9Y3R5 2298 aa5.48□□□□□ -1.53
SCN1A-217ENST00000637988 UBE2L5PA0A1B0GUS4 154 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 HELTA6NFD8 242 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 NPIPB6E9PJ23 425 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 ADRA2AP08913 450 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 FUT3P21217 361 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 CDC20Q12834 499 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 IQCJQ1A5X6 159 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 H3F3CQ6NXT2 135 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 OR4S1Q8NGB4 309 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 TMEM18Q96B42 140 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 CTNNBIP1Q9NSA3 81 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-217ENST00000637988 RNF115Q9Y4L5 304 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 A0A087WUJ7 227 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 IGHV5-51A0A0C4DH38 117 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 TMEM210A6NLX4 147 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 ATP6V1G2-DDX39BF2Z307 99 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 SYNGR2O43760 224 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 MMP7P09237 267 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-217ENST00000637988 SLC25A4P12235 298 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 SNRPBP14678 240 aaKnown RBP5.47□□□□□ -1.53
SCN1A-217ENST00000637988 GDNFP39905 211 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 ANKRD55Q3KP44 614 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 FAM71E1Q6IPT2 247 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 ZNF485Q8NCK3 441 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 OR52I1Q8NGK6 324 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 SLC45A2Q9UMX9 530 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 UBR3Q6ZT12 1888 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 KIF26BQ2KJY2 2108 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 G3V3Q6 166 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 HINT1P49773 126 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-217ENST00000637988 HTRA4P83105 476 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-217ENST00000637988 FZD5Q13467 585 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 ST3GAL2Q16842 350 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 DCAF12L2Q5VW00 463 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 RHBDD2Q6NTF9 364 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 FSCN3Q9NQT6 498 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 TREM2Q9NZC2 230 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 PSG11Q9UQ72 335 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 LAMB2P55268 1798 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 IGHV3OR16-12A0A075B7B8 117 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 TOX4O94842 621 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 CEACAM1P13688 526 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 PRSS42Q7Z5A4 293 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 DVL3Q92997 716 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-217ENST00000637988 SGK494Q96LW2 274 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 PSD2Q9BQI7 771 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 MRPL37Q9BZE1 423 aaKnown RBP5.47□□□□□ -1.53
SCN1A-217ENST00000637988 PLA2G2FQ9BZM2 168 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 ZDHHC8Q9ULC8 765 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 MRPS16Q9Y3D3 137 aaKnown RBP5.47□□□□□ -1.53
SCN1A-217ENST00000637988 MPC1Q9Y5U8 109 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 TEX50A0A1B0GTY4 177 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 ADAM10O14672 748 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 NME2P22392 152 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 CDAP32320 146 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 CASP3P42574 277 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 SNRPD3P62318 126 aaKnown RBP5.47□□□□□ -1.53
SCN1A-217ENST00000637988 TGIF2LXQ8IUE1 241 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 C1orf162Q8NEQ5 155 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-217ENST00000637988 MCHR2Q969V1 340 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 UCK1Q9HA47 277 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 ZNF586Q9NXT0 402 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 CISD1Q9NZ45 108 aaKnown RBP5.47□□□□□ -1.53
SCN1A-217ENST00000637988 A0A1B0GTH9 108 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 ZNF724A8MTY0 619 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 DEFB108AA8MXU0 73 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 M0QYG6 137 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 MAGEB4O15481 346 aaPredicted RBP5.47□□□□□ -1.53
SCN1A-217ENST00000637988 SP9P0CG40 484 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 LIMS3P0CW19 117 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 LIMS4P0CW20 117 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 ORM2P19652 201 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 NTF3P20783 257 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 DCAF10Q5QP82 559 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 COX20Q5RI15 118 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 FCRL1Q96LA6 429 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 C16orf92Q96LL3 132 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 ARHGDIGQ99819 225 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 NDUFA2O43678 99 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 MPDU1O75352 247 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 MGPP08493 103 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 MGMTP16455 207 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 CTSSP25774 331 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 CALCRP30988 508 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 SLC25A35Q3KQZ1 300 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 RNFT1Q5M7Z0 435 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 ZNF343Q6P1L6 599 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 MOGAT3Q86VF5 341 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 NUBPLQ8TB37 319 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 FLYWCH2Q96CP2 140 aaKnown RBP5.47□□□□□ -1.53
SCN1A-217ENST00000637988 OR2D2Q9H210 308 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 SH2D2AQ9NP31 389 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 ASCL3Q9NQ33 180 aa5.47□□□□□ -1.53
SCN1A-217ENST00000637988 TAPBPO15533 448 aa5.46□□□□□ -1.53
SCN1A-217ENST00000637988 DHRS3O75911 302 aa5.46□□□□□ -1.53
SCN1A-217ENST00000637988 PSMB1P20618 241 aaKnown RBP5.46□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms