RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 AKR7A2O43488 359 aa15.66■□□□□ 0.1
CLN3-254ENST00000637050 ORC5O43913 435 aa15.66■□□□□ 0.1
CLN3-254ENST00000637050 C1QL1O75973 258 aa15.66■□□□□ 0.1
CLN3-254ENST00000637050 MELTFP08582 738 aa15.66■□□□□ 0.1
CLN3-254ENST00000637050 BCL3P20749 454 aa15.66■□□□□ 0.1
CLN3-254ENST00000637050 PRSS3P35030 304 aa15.66■□□□□ 0.1
CLN3-254ENST00000637050 OXA1LQ15070 435 aa15.66■□□□□ 0.1
CLN3-254ENST00000637050 CDNFQ49AH0 187 aa15.66■□□□□ 0.1
CLN3-254ENST00000637050 PLAC9Q5JTB6 97 aa15.66■□□□□ 0.1
CLN3-254ENST00000637050 SCCPDHQ8NBX0 429 aa15.66■□□□□ 0.1
CLN3-254ENST00000637050 CHST4Q8NCG5 386 aa15.66■□□□□ 0.1
CLN3-254ENST00000637050 POM121Q96HA1 1249 aa15.66■□□□□ 0.1
CLN3-254ENST00000637050 OCEL1Q9H607 264 aa15.66■□□□□ 0.1
CLN3-254ENST00000637050 ZMAT3Q9HA38 289 aaKnown RBP15.66■□□□□ 0.1
CLN3-254ENST00000637050 PAIP2BQ9ULR5 123 aaKnown RBP15.66■□□□□ 0.1
CLN3-254ENST00000637050 CADP27708 2225 aa15.65■□□□□ 0.1
CLN3-254ENST00000637050 HCFC1P51610 2035 aa15.65■□□□□ 0.1
CLN3-254ENST00000637050 ZSCAN5BA6NJL1 495 aa15.65■□□□□ 0.1
CLN3-254ENST00000637050 F5H5P2 479 aa15.65■□□□□ 0.1
CLN3-254ENST00000637050 TRAPPC2LH3BP13 241 aa15.65■□□□□ 0.1
CLN3-254ENST00000637050 SULT1C2O00338 296 aa15.65■□□□□ 0.1
CLN3-254ENST00000637050 CD3EP07766 207 aa15.65■□□□□ 0.1
CLN3-254ENST00000637050 HIST1H1DP16402 221 aaKnown RBP15.65■□□□□ 0.1
CLN3-254ENST00000637050 GDNFP39905 211 aa15.65■□□□□ 0.1
CLN3-254ENST00000637050 INPP1P49441 399 aa15.65■□□□□ 0.1
CLN3-254ENST00000637050 MAB21L1Q13394 359 aa15.65■□□□□ 0.1
CLN3-254ENST00000637050 ADIPOQQ15848 244 aa15.65■□□□□ 0.1
CLN3-254ENST00000637050 BEX5Q5H9J7 111 aa15.65■□□□□ 0.1
CLN3-254ENST00000637050 Q6ZTK2 550 aa15.65■□□□□ 0.1
CLN3-254ENST00000637050 FBXL14Q8N1E6 418 aa15.65■□□□□ 0.1
CLN3-254ENST00000637050 GPX8Q8TED1 209 aa15.65■□□□□ 0.1
CLN3-254ENST00000637050 GTF3AQ92664 365 aaKnown RBP15.65■□□□□ 0.1
CLN3-254ENST00000637050 RAB3CQ96E17 227 aa15.65■□□□□ 0.1
CLN3-254ENST00000637050 TLNRD1Q9H1K6 362 aa15.65■□□□□ 0.1
CLN3-254ENST00000637050 SCPEP1Q9HB40 452 aa15.65■□□□□ 0.1
CLN3-254ENST00000637050 TAAR3PQ9P1P4 343 aa15.65■□□□□ 0.1
CLN3-254ENST00000637050 KLK11Q9UBX7 282 aa15.65■□□□□ 0.1
CLN3-254ENST00000637050 POU2F3Q9UKI9 436 aa15.65■□□□□ 0.1
CLN3-254ENST00000637050 LINC00854A0A1B0GVQ3 168 aa15.64■□□□□ 0.09
CLN3-254ENST00000637050 PLSCR5A0PG75 271 aa15.64■□□□□ 0.09
CLN3-254ENST00000637050 TMEM235A6NFC5 223 aa15.64■□□□□ 0.09
CLN3-254ENST00000637050 F8VVB4 439 aa15.64■□□□□ 0.09
CLN3-254ENST00000637050 F8VWA3 439 aa15.64■□□□□ 0.09
CLN3-254ENST00000637050 H7C417 338 aa15.64■□□□□ 0.09
CLN3-254ENST00000637050 SIAH2O43255 324 aa15.64■□□□□ 0.09
CLN3-254ENST00000637050 PFDN1O60925 122 aa15.64■□□□□ 0.09
CLN3-254ENST00000637050 ATP6V1G1O75348 118 aa15.64■□□□□ 0.09
CLN3-254ENST00000637050 RHBDL1O75783 438 aa15.64■□□□□ 0.09
CLN3-254ENST00000637050 PTTG1O95997 202 aa15.64■□□□□ 0.09
CLN3-254ENST00000637050 GSTP1P09211 210 aaKnown RBP15.64■□□□□ 0.09
CLN3-254ENST00000637050 BLVRBP30043 206 aaPredicted RBP15.64■□□□□ 0.09
CLN3-254ENST00000637050 RBM11P57052 281 aaKnown RBP15.64■□□□□ 0.09
CLN3-254ENST00000637050 FGF12P61328 243 aa15.64■□□□□ 0.09
CLN3-254ENST00000637050 GUCA2AQ02747 115 aa15.64■□□□□ 0.09
CLN3-254ENST00000637050 MZT1Q08AG7 82 aa15.64■□□□□ 0.09
CLN3-254ENST00000637050 NHLRC3Q5JS37 347 aa15.64■□□□□ 0.09
CLN3-254ENST00000637050 ZNF57Q68EA5 555 aaPredicted RBP15.64■□□□□ 0.09
CLN3-254ENST00000637050 CENPSQ8N2Z9 138 aa15.64■□□□□ 0.09
CLN3-254ENST00000637050 MINDY2Q8NBR6 621 aa15.64■□□□□ 0.09
CLN3-254ENST00000637050 SEH1LQ96EE3 360 aa15.64■□□□□ 0.09
CLN3-254ENST00000637050 RHOFQ9HBH0 211 aa15.64■□□□□ 0.09
CLN3-254ENST00000637050 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP15.64■□□□□ 0.09
CLN3-254ENST00000637050 RBFOX1Q9NWB1 397 aaKnown RBP15.64■□□□□ 0.09
CLN3-254ENST00000637050 MTFP1Q9UDX5 166 aa15.64■□□□□ 0.09
CLN3-254ENST00000637050 ELF5Q9UKW6 265 aaPredicted RBP15.64■□□□□ 0.09
CLN3-254ENST00000637050 POLDIP2Q9Y2S7 368 aa15.64■□□□□ 0.09
CLN3-254ENST00000637050 KCNK7Q9Y2U2 307 aa15.64■□□□□ 0.09
CLN3-254ENST00000637050 HIVEP3Q5T1R4 2406 aa15.64■□□□□ 0.09
CLN3-254ENST00000637050 MFNGO00587 321 aa15.63■□□□□ 0.09
CLN3-254ENST00000637050 GRPP07492 148 aa15.63■□□□□ 0.09
CLN3-254ENST00000637050 OR4A8P0C604 315 aa15.63■□□□□ 0.09
CLN3-254ENST00000637050 GNB3P16520 340 aa15.63■□□□□ 0.09
CLN3-254ENST00000637050 CD200P41217 278 aa15.63■□□□□ 0.09
CLN3-254ENST00000637050 TAF9Q16594 264 aa15.63■□□□□ 0.09
CLN3-254ENST00000637050 PIGYQ3MUY2 71 aa15.63■□□□□ 0.09
CLN3-254ENST00000637050 SIGIRRQ6IA17 410 aa15.63■□□□□ 0.09
CLN3-254ENST00000637050 DCDC5Q6ZRR9 648 aa15.63■□□□□ 0.09
CLN3-254ENST00000637050 RTN4RL2Q86UN3 420 aa15.63■□□□□ 0.09
CLN3-254ENST00000637050 C11orf53Q8IXP5 236 aa15.63■□□□□ 0.09
CLN3-254ENST00000637050 OR2Z1Q8NG97 314 aa15.63■□□□□ 0.09
CLN3-254ENST00000637050 ARHGAP5-AS1Q96IT6 56 aa15.63■□□□□ 0.09
CLN3-254ENST00000637050 C11orf54Q9H0W9 315 aaPredicted RBP15.63■□□□□ 0.09
CLN3-254ENST00000637050 ST3GAL6Q9Y274 331 aa15.63■□□□□ 0.09
CLN3-254ENST00000637050 DIDO1Q9BTC0 2240 aaKnown RBP15.63■□□□□ 0.09
CLN3-254ENST00000637050 RELNP78509 3460 aa15.63■□□□□ 0.09
CLN3-254ENST00000637050 CFAP46Q8IYW2 2715 aa15.63■□□□□ 0.09
CLN3-254ENST00000637050 DEFB108AA8MXU0 73 aa15.63■□□□□ 0.09
CLN3-254ENST00000637050 CDIPTO14735 213 aa15.63■□□□□ 0.09
CLN3-254ENST00000637050 RBBP9O75884 186 aa15.63■□□□□ 0.09
CLN3-254ENST00000637050 PTBP3O95758 552 aaKnown RBP15.63■□□□□ 0.09
CLN3-254ENST00000637050 LPLP06858 475 aa15.63■□□□□ 0.09
CLN3-254ENST00000637050 ACAA1P09110 424 aaPredicted RBP15.63■□□□□ 0.09
CLN3-254ENST00000637050 GABRR1P24046 479 aa15.63■□□□□ 0.09
CLN3-254ENST00000637050 LOXP28300 417 aaPredicted RBP15.63■□□□□ 0.09
CLN3-254ENST00000637050 SRP9P49458 86 aaKnown RBP15.63■□□□□ 0.09
CLN3-254ENST00000637050 KLF9Q13886 244 aaPredicted RBP15.63■□□□□ 0.09
CLN3-254ENST00000637050 DAZAP2Q15038 168 aaPredicted RBP15.63■□□□□ 0.09
CLN3-254ENST00000637050 TRIM16LQ309B1 348 aa15.63■□□□□ 0.09
CLN3-254ENST00000637050 GDPD3Q7L5L3 318 aa15.63■□□□□ 0.09
CLN3-254ENST00000637050 TOMM5Q8N4H5 51 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms