RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 GID4Q8IVV7 300 aa15.22■□□□□ 0.03
CLN3-218ENST00000565688 C11orf42Q8N5U0 333 aa15.22■□□□□ 0.03
CLN3-218ENST00000565688 TCEANCQ8N8B7 351 aa15.22■□□□□ 0.03
CLN3-218ENST00000565688 OR14K1Q8NGZ2 314 aa15.22■□□□□ 0.03
CLN3-218ENST00000565688 OR2T6Q8NHC8 308 aa15.22■□□□□ 0.03
CLN3-218ENST00000565688 PPP1R35Q8TAP8 253 aa15.22■□□□□ 0.03
CLN3-218ENST00000565688 PKIBQ9C010 78 aa15.22■□□□□ 0.03
CLN3-218ENST00000565688 ENOPH1Q9UHY7 261 aa15.22■□□□□ 0.03
CLN3-218ENST00000565688 A0A1B0GTI1 187 aa15.21■□□□□ 0.03
CLN3-218ENST00000565688 ZAR1LA6NP61 321 aa15.21■□□□□ 0.03
CLN3-218ENST00000565688 G3V2T6 193 aa15.21■□□□□ 0.03
CLN3-218ENST00000565688 CEBPDP49716 269 aaPredicted RBP15.21■□□□□ 0.03
CLN3-218ENST00000565688 C12orf73Q69YU5 71 aa15.21■□□□□ 0.03
CLN3-218ENST00000565688 CRIP3Q6Q6R5 217 aa15.21■□□□□ 0.03
CLN3-218ENST00000565688 OR4M1Q8NGD0 313 aa15.21■□□□□ 0.03
CLN3-218ENST00000565688 SLC7A6OSQ96CW6 309 aaPredicted RBP15.21■□□□□ 0.03
CLN3-218ENST00000565688 NPFFR1Q9GZQ6 430 aa15.21■□□□□ 0.03
CLN3-218ENST00000565688 OR14J1Q9UGF5 321 aa15.21■□□□□ 0.03
CLN3-218ENST00000565688 MRM2Q9UI43 246 aaKnown RBP15.21■□□□□ 0.03
CLN3-218ENST00000565688 SLC7A11Q9UPY5 501 aa15.21■□□□□ 0.03
CLN3-218ENST00000565688 MAGEB4O15481 346 aaPredicted RBP15.2■□□□□ 0.02
CLN3-218ENST00000565688 KRT8P05787 483 aa15.2■□□□□ 0.02
CLN3-218ENST00000565688 CCL1P22362 96 aa15.2■□□□□ 0.02
CLN3-218ENST00000565688 ERVK11-1P61568 191 aa15.2■□□□□ 0.02
CLN3-218ENST00000565688 IL24Q13007 206 aa15.2■□□□□ 0.02
CLN3-218ENST00000565688 ATP6AP1Q15904 470 aa15.2■□□□□ 0.02
CLN3-218ENST00000565688 PLEKHG7Q6ZR37 379 aa15.2■□□□□ 0.02
CLN3-218ENST00000565688 IL4I1Q96RQ9 567 aa15.2■□□□□ 0.02
CLN3-218ENST00000565688 PLEKHA1Q9HB21 404 aa15.2■□□□□ 0.02
CLN3-218ENST00000565688 WARS2Q9UGM6 360 aaKnown RBP15.2■□□□□ 0.02
CLN3-218ENST00000565688 TET2Q6N021 2002 aaPredicted RBP15.2■□□□□ 0.02
CLN3-218ENST00000565688 A6NIN4 97 aa15.19■□□□□ 0.02
CLN3-218ENST00000565688 C17orf98A8MV24 154 aa15.19■□□□□ 0.02
CLN3-218ENST00000565688 VGLL3A8MV65 326 aa15.19■□□□□ 0.02
CLN3-218ENST00000565688 K7N7A8 449 aa15.19■□□□□ 0.02
CLN3-218ENST00000565688 M0R129 80 aa15.19■□□□□ 0.02
CLN3-218ENST00000565688 MITFO75030 526 aaPredicted RBP15.19■□□□□ 0.02
CLN3-218ENST00000565688 RBP4P02753 201 aa15.19■□□□□ 0.02
CLN3-218ENST00000565688 CCL3L1P16619 93 aa15.19■□□□□ 0.02
CLN3-218ENST00000565688 COX7A1P24310 79 aa15.19■□□□□ 0.02
CLN3-218ENST00000565688 EPHA2P29317 976 aa15.19■□□□□ 0.02
CLN3-218ENST00000565688 BMXP51813 675 aa15.19■□□□□ 0.02
CLN3-218ENST00000565688 ZNF273Q14593 569 aa15.19■□□□□ 0.02
CLN3-218ENST00000565688 KDM4DQ6B0I6 523 aa15.19■□□□□ 0.02
CLN3-218ENST00000565688 ANGPTL5Q86XS5 388 aa15.19■□□□□ 0.02
CLN3-218ENST00000565688 ZDHHC13Q8IUH4 622 aa15.19■□□□□ 0.02
CLN3-218ENST00000565688 YIPF7Q8N8F6 280 aa15.19■□□□□ 0.02
CLN3-218ENST00000565688 CCDC54Q8NEL0 328 aa15.19■□□□□ 0.02
CLN3-218ENST00000565688 BCAS4Q8TDM0 211 aa15.19■□□□□ 0.02
CLN3-218ENST00000565688 FOXRED1Q96CU9 486 aaPredicted RBP15.19■□□□□ 0.02
CLN3-218ENST00000565688 CDCA4Q9BXL8 241 aa15.19■□□□□ 0.02
CLN3-218ENST00000565688 SLC22A13Q9Y226 551 aa15.19■□□□□ 0.02
CLN3-218ENST00000565688 SIGLEC9Q9Y336 463 aa15.19■□□□□ 0.02
CLN3-218ENST00000565688 PRKDCP78527 4128 aaKnown RBP15.19■□□□□ 0.02
CLN3-218ENST00000565688 FAM90A8PA6NJQ4 464 aa15.18■□□□□ 0.02
CLN3-218ENST00000565688 RPP14O95059 124 aaKnown RBP15.18■□□□□ 0.02
CLN3-218ENST00000565688 CHRM2P08172 466 aa15.18■□□□□ 0.02
CLN3-218ENST00000565688 KLHDC1Q8N7A1 406 aa15.18■□□□□ 0.02
CLN3-218ENST00000565688 ASCC1Q8N9N2 400 aaKnown RBP15.18■□□□□ 0.02
CLN3-218ENST00000565688 OR13D1Q8NGV5 346 aa15.18■□□□□ 0.02
CLN3-218ENST00000565688 PIFOQ8TCI5 191 aa15.18■□□□□ 0.02
CLN3-218ENST00000565688 CFHR4Q92496 578 aa15.18■□□□□ 0.02
CLN3-218ENST00000565688 GABARAPL1Q9H0R8 117 aa15.18■□□□□ 0.02
CLN3-218ENST00000565688 TBL2Q9Y4P3 447 aaKnown RBP15.18■□□□□ 0.02
CLN3-218ENST00000565688 FAM230AA0A1W2PPH8 454 aa15.17■□□□□ 0.02
CLN3-218ENST00000565688 SYT7O43581 403 aa15.17■□□□□ 0.02
CLN3-218ENST00000565688 GATBO75879 557 aaKnown RBP15.17■□□□□ 0.02
CLN3-218ENST00000565688 OR2T7P0C7T2 308 aa15.17■□□□□ 0.02
CLN3-218ENST00000565688 ZNF728P0DKX0 622 aa15.17■□□□□ 0.02
CLN3-218ENST00000565688 PIPP12273 146 aaPredicted RBP15.17■□□□□ 0.02
CLN3-218ENST00000565688 FASP25445 335 aa15.17■□□□□ 0.02
CLN3-218ENST00000565688 PAX6P26367 422 aa15.17■□□□□ 0.02
CLN3-218ENST00000565688 DLX6P56179 175 aa15.17■□□□□ 0.02
CLN3-218ENST00000565688 COL10A1Q03692 680 aa15.17■□□□□ 0.02
CLN3-218ENST00000565688 ZNF782Q6ZMW2 699 aaPredicted RBP15.17■□□□□ 0.02
CLN3-218ENST00000565688 GDPD3Q7L5L3 318 aa15.17■□□□□ 0.02
CLN3-218ENST00000565688 CATSPERDQ86XM0 798 aa15.17■□□□□ 0.02
CLN3-218ENST00000565688 C1QL4Q86Z23 238 aa15.17■□□□□ 0.02
CLN3-218ENST00000565688 BATF2Q8N1L9 274 aa15.17■□□□□ 0.02
CLN3-218ENST00000565688 TRMT10AQ8TBZ6 339 aaKnown RBP15.17■□□□□ 0.02
CLN3-218ENST00000565688 MALSU1Q96EH3 234 aa15.17■□□□□ 0.02
CLN3-218ENST00000565688 CEP19Q96LK0 163 aa15.17■□□□□ 0.02
CLN3-218ENST00000565688 ADI1Q9BV57 179 aa15.17■□□□□ 0.02
CLN3-218ENST00000565688 CADM1Q9BY67 442 aaKnown RBP15.17■□□□□ 0.02
CLN3-218ENST00000565688 METTL15A6NJ78 407 aa15.16■□□□□ 0.02
CLN3-218ENST00000565688 CHST1O43916 411 aa15.16■□□□□ 0.02
CLN3-218ENST00000565688 ZNF737O75373 536 aa15.16■□□□□ 0.02
CLN3-218ENST00000565688 SULT1C4O75897 302 aa15.16■□□□□ 0.02
CLN3-218ENST00000565688 SERPINA3P01011 423 aa15.16■□□□□ 0.02
CLN3-218ENST00000565688 OPN1MWP04001 364 aa15.16■□□□□ 0.02
CLN3-218ENST00000565688 OPN1MW2P0DN77 364 aa15.16■□□□□ 0.02
CLN3-218ENST00000565688 OPN1MW3P0DN78 364 aa15.16■□□□□ 0.02
CLN3-218ENST00000565688 HTR1FP30939 366 aa15.16■□□□□ 0.02
CLN3-218ENST00000565688 FUT6P51993 359 aa15.16■□□□□ 0.02
CLN3-218ENST00000565688 SSX6Q7RTT6 188 aa15.16■□□□□ 0.02
CLN3-218ENST00000565688 C10orf35Q96D05 121 aa15.16■□□□□ 0.02
CLN3-218ENST00000565688 TBX5Q99593 518 aa15.16■□□□□ 0.02
CLN3-218ENST00000565688 ABCB10Q9NRK6 738 aa15.16■□□□□ 0.02
CLN3-218ENST00000565688 MTCH1Q9NZJ7 389 aa15.16■□□□□ 0.02
CLN3-218ENST00000565688 FOXJ3Q9UPW0 622 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms