RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 A0A1W2PNR3 127 aa14.21□□□□□ -0.14
SHMT2-231ENST00000557433 EIF1BO60739 113 aaKnown RBP14.21□□□□□ -0.14
SHMT2-231ENST00000557433 PRH1P02810 166 aa14.21□□□□□ -0.14
SHMT2-231ENST00000557433 GABRR1P24046 479 aa14.21□□□□□ -0.14
SHMT2-231ENST00000557433 CLDN17P56750 224 aa14.21□□□□□ -0.14
SHMT2-231ENST00000557433 ENDOGQ14249 297 aaKnown RBP14.21□□□□□ -0.14
SHMT2-231ENST00000557433 KRBOX4Q5JUW0 171 aa14.21□□□□□ -0.14
SHMT2-231ENST00000557433 LCN10Q6JVE6 187 aa14.21□□□□□ -0.14
SHMT2-231ENST00000557433 ASCL4Q6XD76 172 aa14.21□□□□□ -0.14
SHMT2-231ENST00000557433 ETV3LQ6ZN32 361 aa14.21□□□□□ -0.14
SHMT2-231ENST00000557433 SHISA6Q6ZSJ9 500 aa14.21□□□□□ -0.14
SHMT2-231ENST00000557433 NPRL2Q8WTW4 380 aa14.21□□□□□ -0.14
SHMT2-231ENST00000557433 ABHD14BQ96IU4 210 aa14.21□□□□□ -0.14
SHMT2-231ENST00000557433 NIT2Q9NQR4 276 aa14.21□□□□□ -0.14
SHMT2-231ENST00000557433 NSG1A0A0A6YYJ2 146 aa14.2□□□□□ -0.14
SHMT2-231ENST00000557433 A0A1W2PPH5 198 aa14.2□□□□□ -0.14
SHMT2-231ENST00000557433 A6NLC8 198 aa14.2□□□□□ -0.14
SHMT2-231ENST00000557433 ZNF850A8MQ14 1090 aa14.2□□□□□ -0.14
SHMT2-231ENST00000557433 ZNF814B7Z6K7 855 aa14.2□□□□□ -0.14
SHMT2-231ENST00000557433 E9PLN8 166 aa14.2□□□□□ -0.14
SHMT2-231ENST00000557433 F5H5K5 113 aa14.2□□□□□ -0.14
SHMT2-231ENST00000557433 M0R135 149 aa14.2□□□□□ -0.14
SHMT2-231ENST00000557433 MASP2O00187 686 aa14.2□□□□□ -0.14
SHMT2-231ENST00000557433 OR5AC1P0C628 307 aa14.2□□□□□ -0.14
SHMT2-231ENST00000557433 ANOS1P23352 680 aa14.2□□□□□ -0.14
SHMT2-231ENST00000557433 ZNF266Q14584 549 aa14.2□□□□□ -0.14
SHMT2-231ENST00000557433 GNMTQ14749 295 aa14.2□□□□□ -0.14
SHMT2-231ENST00000557433 OR8B8Q15620 311 aa14.2□□□□□ -0.14
SHMT2-231ENST00000557433 NKAIN1Q4KMZ8 207 aa14.2□□□□□ -0.14
SHMT2-231ENST00000557433 SLC16A13Q7RTY0 426 aa14.2□□□□□ -0.14
SHMT2-231ENST00000557433 ZNF799Q96GE5 643 aa14.2□□□□□ -0.14
SHMT2-231ENST00000557433 LINC00587B1AMM8 73 aa14.19□□□□□ -0.14
SHMT2-231ENST00000557433 ONECUT2O95948 504 aa14.19□□□□□ -0.14
SHMT2-231ENST00000557433 MTCP1P56278 107 aa14.19□□□□□ -0.14
SHMT2-231ENST00000557433 RSU1Q15404 277 aa14.19□□□□□ -0.14
SHMT2-231ENST00000557433 TMEM176BQ3YBM2 270 aaPredicted RBP14.19□□□□□ -0.14
SHMT2-231ENST00000557433 FBXW12Q6X9E4 464 aa14.19□□□□□ -0.14
SHMT2-231ENST00000557433 RBMS3Q6XE24 437 aaKnown RBP14.19□□□□□ -0.14
SHMT2-231ENST00000557433 FAM185AQ8N0U4 392 aa14.19□□□□□ -0.14
SHMT2-231ENST00000557433 TMEM156Q8N614 296 aa14.19□□□□□ -0.14
SHMT2-231ENST00000557433 OR10G3Q8NGC4 313 aa14.19□□□□□ -0.14
SHMT2-231ENST00000557433 HPSE2Q8WWQ2 592 aa14.19□□□□□ -0.14
SHMT2-231ENST00000557433 GNRHR2Q96P88 292 aa14.19□□□□□ -0.14
SHMT2-231ENST00000557433 IP6K3Q96PC2 410 aa14.19□□□□□ -0.14
SHMT2-231ENST00000557433 WDR77Q9BQA1 342 aaPredicted RBP14.19□□□□□ -0.14
SHMT2-231ENST00000557433 WFDC1Q9HC57 220 aa14.19□□□□□ -0.14
SHMT2-231ENST00000557433 C19orf25Q9UFG5 118 aaPredicted RBP14.19□□□□□ -0.14
SHMT2-231ENST00000557433 AK3Q9UIJ7 227 aa14.19□□□□□ -0.14
SHMT2-231ENST00000557433 PTRH2Q9Y3E5 179 aaKnown RBP14.19□□□□□ -0.14
SHMT2-231ENST00000557433 SEC16AO15027 2179 aa14.19□□□□□ -0.14
SHMT2-231ENST00000557433 K7N7A8 449 aa14.19□□□□□ -0.14
SHMT2-231ENST00000557433 CDS2O95674 445 aa14.19□□□□□ -0.14
SHMT2-231ENST00000557433 AKR1C3P42330 323 aa14.19□□□□□ -0.14
SHMT2-231ENST00000557433 H3F3AP84243 136 aa14.19□□□□□ -0.14
SHMT2-231ENST00000557433 SHBQ15464 509 aa14.19□□□□□ -0.14
SHMT2-231ENST00000557433 FAM69BQ5VUD6 431 aa14.19□□□□□ -0.14
SHMT2-231ENST00000557433 LHFPL2Q6ZUX7 228 aa14.19□□□□□ -0.14
SHMT2-231ENST00000557433 CPEB2Q7Z5Q1 589 aaKnown RBP14.19□□□□□ -0.14
SHMT2-231ENST00000557433 ZNF565Q8N9K5 539 aa14.19□□□□□ -0.14
SHMT2-231ENST00000557433 ARID1BQ8NFD5 2236 aaPredicted RBP14.19□□□□□ -0.14
SHMT2-231ENST00000557433 PIGTQ969N2 578 aa14.19□□□□□ -0.14
SHMT2-231ENST00000557433 NABP1Q96AH0 204 aa14.19□□□□□ -0.14
SHMT2-231ENST00000557433 MSI2Q96DH6 328 aaKnown RBP14.19□□□□□ -0.14
SHMT2-231ENST00000557433 SPACA9Q96E40 222 aaPredicted RBP14.19□□□□□ -0.14
SHMT2-231ENST00000557433 ZNF286AQ9HBT8 521 aa14.19□□□□□ -0.14
SHMT2-231ENST00000557433 IL36GQ9NZH8 169 aa14.19□□□□□ -0.14
SHMT2-231ENST00000557433 ZNF391Q9UJN7 358 aa14.19□□□□□ -0.14
SHMT2-231ENST00000557433 TP53I11O14683 189 aa14.18□□□□□ -0.14
SHMT2-231ENST00000557433 DHHO43323 396 aa14.18□□□□□ -0.14
SHMT2-231ENST00000557433 SFTPDP35247 375 aa14.18□□□□□ -0.14
SHMT2-231ENST00000557433 AFF3P51826 1226 aaKnown RBP14.18□□□□□ -0.14
SHMT2-231ENST00000557433 POLR2GP62487 172 aaKnown RBP eCLIP14.18□□□□□ -0.14
SHMT2-231ENST00000557433 SOHLH1Q5JUK2 328 aa14.18□□□□□ -0.14
SHMT2-231ENST00000557433 MOB3AQ96BX8 217 aa14.18□□□□□ -0.14
SHMT2-231ENST00000557433 MARS2Q96GW9 593 aaKnown RBP14.18□□□□□ -0.14
SHMT2-231ENST00000557433 TPSD1Q9BZJ3 242 aa14.18□□□□□ -0.14
SHMT2-231ENST00000557433 BCO1Q9HAY6 547 aa14.18□□□□□ -0.14
SHMT2-231ENST00000557433 SLC2A9Q9NRM0 540 aa14.18□□□□□ -0.14
SHMT2-231ENST00000557433 TCFL5Q9UL49 500 aa14.18□□□□□ -0.14
SHMT2-231ENST00000557433 MTCH2Q9Y6C9 303 aa14.18□□□□□ -0.14
SHMT2-231ENST00000557433 LINC01387J3KSC0 135 aa14.17□□□□□ -0.14
SHMT2-231ENST00000557433 OR8U8P0C7N1 319 aa14.17□□□□□ -0.14
SHMT2-231ENST00000557433 SUMF2Q8NBJ7 301 aa14.17□□□□□ -0.14
SHMT2-231ENST00000557433 SMRP1Q8NCR6 262 aa14.17□□□□□ -0.14
SHMT2-231ENST00000557433 OR4D5Q8NGN0 318 aa14.17□□□□□ -0.14
SHMT2-231ENST00000557433 CD300LFQ8TDQ1 290 aa14.17□□□□□ -0.14
SHMT2-231ENST00000557433 TOMM40LQ969M1 308 aa14.17□□□□□ -0.14
SHMT2-231ENST00000557433 CYYR1Q96J86 154 aa14.17□□□□□ -0.14
SHMT2-231ENST00000557433 SPIN2AQ99865 258 aa14.17□□□□□ -0.14
SHMT2-231ENST00000557433 SPIN2BQ9BPZ2 258 aa14.17□□□□□ -0.14
SHMT2-231ENST00000557433 HDHD3Q9BSH5 251 aaPredicted RBP14.17□□□□□ -0.14
SHMT2-231ENST00000557433 FAAP24Q9BTP7 215 aa14.17□□□□□ -0.14
SHMT2-231ENST00000557433 A0A087WWC5 75 aa14.17□□□□□ -0.14
SHMT2-231ENST00000557433 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.17□□□□□ -0.14
SHMT2-231ENST00000557433 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.17□□□□□ -0.14
SHMT2-231ENST00000557433 C5orf63A6NC05 138 aa14.17□□□□□ -0.14
SHMT2-231ENST00000557433 TERTO14746 1132 aaKnown RBP14.17□□□□□ -0.14
SHMT2-231ENST00000557433 RAMP1O60894 148 aa14.17□□□□□ -0.14
SHMT2-231ENST00000557433 DKK1O94907 266 aa14.17□□□□□ -0.14
SHMT2-231ENST00000557433 CBR1P16152 277 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms