RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 MS4A2Q01362 244 aa10.92□□□□□ -0.66
SS18-204ENST00000539244 SSX2Q16385 188 aa10.92□□□□□ -0.66
SS18-204ENST00000539244 ZNF829Q3KNS6 432 aaPredicted RBP10.92□□□□□ -0.66
SS18-204ENST00000539244 PLA1AQ53H76 456 aa10.92□□□□□ -0.66
SS18-204ENST00000539244 CLVS2Q5SYC1 327 aa10.92□□□□□ -0.66
SS18-204ENST00000539244 Q6ZSR3 168 aa10.92□□□□□ -0.66
SS18-204ENST00000539244 TMEM179BQ7Z7N9 219 aa10.92□□□□□ -0.66
SS18-204ENST00000539244 COMMD2Q86X83 199 aa10.92□□□□□ -0.66
SS18-204ENST00000539244 TMEM219Q86XT9 240 aa10.92□□□□□ -0.66
SS18-204ENST00000539244 OCSTAMPQ9BR26 566 aa10.92□□□□□ -0.66
SS18-204ENST00000539244 DNAJB9Q9UBS3 223 aa10.92□□□□□ -0.66
SS18-204ENST00000539244 ARL2BPQ9Y2Y0 163 aa10.92□□□□□ -0.66
SS18-204ENST00000539244 DHRS7CA6NNS2 312 aa10.91□□□□□ -0.66
SS18-204ENST00000539244 PSMD9O00233 223 aa10.91□□□□□ -0.66
SS18-204ENST00000539244 ZNF737O75373 536 aa10.91□□□□□ -0.66
SS18-204ENST00000539244 PEX14O75381 377 aa10.91□□□□□ -0.66
SS18-204ENST00000539244 SRSF10O75494 262 aaKnown RBP10.91□□□□□ -0.66
SS18-204ENST00000539244 DCTN3O75935 186 aa10.91□□□□□ -0.66
SS18-204ENST00000539244 CST1P01037 141 aa10.91□□□□□ -0.66
SS18-204ENST00000539244 TTRP02766 147 aa10.91□□□□□ -0.66
SS18-204ENST00000539244 ALDOBP05062 364 aa10.91□□□□□ -0.66
SS18-204ENST00000539244 ZNF728P0DKX0 622 aa10.91□□□□□ -0.66
SS18-204ENST00000539244 IGHV1-8P0DP01 117 aa10.91□□□□□ -0.66
SS18-204ENST00000539244 RIDAP52758 137 aaKnown RBP10.91□□□□□ -0.66
SS18-204ENST00000539244 RPS7P62081 194 aaKnown RBP10.91□□□□□ -0.66
SS18-204ENST00000539244 BLCAPP62952 87 aa10.91□□□□□ -0.66
SS18-204ENST00000539244 APOFQ13790 326 aa10.91□□□□□ -0.66
SS18-204ENST00000539244 MINOS1Q5TGZ0 78 aa10.91□□□□□ -0.66
SS18-204ENST00000539244 Q6ZS46 218 aa10.91□□□□□ -0.66
SS18-204ENST00000539244 PIGWQ7Z7B1 504 aa10.91□□□□□ -0.66
SS18-204ENST00000539244 ASB17Q8WXJ9 295 aa10.91□□□□□ -0.66
SS18-204ENST00000539244 CHID1Q9BWS9 393 aa10.91□□□□□ -0.66
SS18-204ENST00000539244 PKIBQ9C010 78 aa10.91□□□□□ -0.66
SS18-204ENST00000539244 MOB1AQ9H8S9 216 aa10.91□□□□□ -0.66
SS18-204ENST00000539244 SLC25A19Q9HC21 320 aa10.91□□□□□ -0.66
SS18-204ENST00000539244 OR14J1Q9UGF5 321 aa10.91□□□□□ -0.66
SS18-204ENST00000539244 TMEM14AQ9Y6G1 99 aa10.91□□□□□ -0.66
SS18-204ENST00000539244 MINOS1-NBL1R4GNA1 71 aa10.91□□□□□ -0.66
SS18-204ENST00000539244 V9GYS6 101 aa10.91□□□□□ -0.66
SS18-204ENST00000539244 DNAH9Q9NYC9 4486 aa10.9□□□□□ -0.66
SS18-204ENST00000539244 CCDC182A6NF36 153 aa10.9□□□□□ -0.66
SS18-204ENST00000539244 FAM90A22PA8MWA6 464 aa10.9□□□□□ -0.66
SS18-204ENST00000539244 B2RBV5 119 aa10.9□□□□□ -0.66
SS18-204ENST00000539244 PIPP12273 146 aaPredicted RBP10.9□□□□□ -0.66
SS18-204ENST00000539244 IGLL1P15814 213 aa10.9□□□□□ -0.66
SS18-204ENST00000539244 CD33P20138 364 aa10.9□□□□□ -0.66
SS18-204ENST00000539244 AZGP1P25311 298 aaKnown RBP10.9□□□□□ -0.66
SS18-204ENST00000539244 VDAC2P45880 294 aaPredicted RBP10.9□□□□□ -0.66
SS18-204ENST00000539244 COL10A1Q03692 680 aa10.9□□□□□ -0.66
SS18-204ENST00000539244 MFGE8Q08431 387 aaPredicted RBP10.9□□□□□ -0.66
SS18-204ENST00000539244 IL24Q13007 206 aa10.9□□□□□ -0.66
SS18-204ENST00000539244 VAX1Q5SQQ9 334 aa10.9□□□□□ -0.66
SS18-204ENST00000539244 TCF23Q7RTU1 214 aa10.9□□□□□ -0.66
SS18-204ENST00000539244 ADGRG5Q8IZF4 528 aa10.9□□□□□ -0.66
SS18-204ENST00000539244 OR14K1Q8NGZ2 314 aa10.9□□□□□ -0.66
SS18-204ENST00000539244 GPR173Q9NS66 373 aa10.9□□□□□ -0.66
SS18-204ENST00000539244 COPS3Q9UNS2 423 aa10.9□□□□□ -0.66
SS18-204ENST00000539244 SLC22A13Q9Y226 551 aa10.9□□□□□ -0.66
SS18-204ENST00000539244 NBEAL2Q6ZNJ1 2754 aa10.9□□□□□ -0.66
SS18-204ENST00000539244 A0A1B0GTI1 187 aa10.89□□□□□ -0.67
SS18-204ENST00000539244 CHRM2P08172 466 aa10.89□□□□□ -0.67
SS18-204ENST00000539244 ANXA8P13928 327 aa10.89□□□□□ -0.67
SS18-204ENST00000539244 OR12D2P58182 307 aa10.89□□□□□ -0.67
SS18-204ENST00000539244 MEF2CQ06413 473 aaPredicted RBP10.89□□□□□ -0.67
SS18-204ENST00000539244 TMEM95Q3KNT9 176 aa10.89□□□□□ -0.67
SS18-204ENST00000539244 ASRGL1Q7L266 308 aa10.89□□□□□ -0.67
SS18-204ENST00000539244 ELMOD2Q8IZ81 293 aa10.89□□□□□ -0.67
SS18-204ENST00000539244 OR8H2Q8N162 312 aa10.89□□□□□ -0.67
SS18-204ENST00000539244 ASCC1Q8N9N2 400 aaKnown RBP10.89□□□□□ -0.67
SS18-204ENST00000539244 ASB9Q96DX5 294 aa10.89□□□□□ -0.67
SS18-204ENST00000539244 ZNF714Q96N38 554 aa10.89□□□□□ -0.67
SS18-204ENST00000539244 OR5M11Q96RB7 305 aa10.89□□□□□ -0.67
SS18-204ENST00000539244 TEX12Q9BXU0 123 aa10.89□□□□□ -0.67
SS18-204ENST00000539244 ZNF556Q9HAH1 456 aa10.89□□□□□ -0.67
SS18-204ENST00000539244 SEBOXQ9HB31 216 aaPredicted RBP10.89□□□□□ -0.67
SS18-204ENST00000539244 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.89□□□□□ -0.67
SS18-204ENST00000539244 LOC110117498-PIK3R3F6TDL0 507 aa10.88□□□□□ -0.67
SS18-204ENST00000539244 K7EIL1 84 aa10.88□□□□□ -0.67
SS18-204ENST00000539244 F2RL2O00254 374 aa10.88□□□□□ -0.67
SS18-204ENST00000539244 MPIG6BO95866 241 aa10.88□□□□□ -0.67
SS18-204ENST00000539244 MRPL3P09001 348 aaKnown RBP10.88□□□□□ -0.67
SS18-204ENST00000539244 HOXB6P17509 224 aaKnown RBP10.88□□□□□ -0.67
SS18-204ENST00000539244 CCL1P22362 96 aa10.88□□□□□ -0.67
SS18-204ENST00000539244 ACTA2P62736 377 aa10.88□□□□□ -0.67
SS18-204ENST00000539244 ACTG2P63267 376 aa10.88□□□□□ -0.67
SS18-204ENST00000539244 ACTC1P68032 377 aa10.88□□□□□ -0.67
SS18-204ENST00000539244 ACTA1P68133 377 aa10.88□□□□□ -0.67
SS18-204ENST00000539244 COL7A1Q02388 2944 aa10.88□□□□□ -0.67
SS18-204ENST00000539244 ARSJQ5FYB0 599 aaPredicted RBP10.88□□□□□ -0.67
SS18-204ENST00000539244 TMEM236Q5W0B7 351 aa10.88□□□□□ -0.67
SS18-204ENST00000539244 GDPD3Q7L5L3 318 aa10.88□□□□□ -0.67
SS18-204ENST00000539244 C16orf82Q7Z2V1 217 aa10.88□□□□□ -0.67
SS18-204ENST00000539244 OR5AU1Q8NGC0 362 aa10.88□□□□□ -0.67
SS18-204ENST00000539244 IKZF2Q9UKS7 526 aa10.88□□□□□ -0.67
SS18-204ENST00000539244 LINC00312Q9Y6C7 94 aa10.88□□□□□ -0.67
SS18-204ENST00000539244 R4GMQ9 66 aa10.88□□□□□ -0.67
SS18-204ENST00000539244 IGHV2-26A0A0B4J1V2 119 aa10.87□□□□□ -0.67
SS18-204ENST00000539244 hADV38S2A0JD32 116 aa10.87□□□□□ -0.67
SS18-204ENST00000539244 GNGT2O14610 69 aa10.87□□□□□ -0.67
SS18-204ENST00000539244 JUNBP17275 347 aaPredicted RBP10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms