RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	RPL3	P39023	403 aa	Known RBP	4.84	□□□□□ -1.63
CD44-231	ENST00000531110	FRK	P42685	505 aa	Predicted RBP	4.84	□□□□□ -1.63
CD44-231	ENST00000531110	RBM34	P42696	430 aa	Known RBP	4.84	□□□□□ -1.63
CD44-231	ENST00000531110	RPL29	P47914	159 aa	Known RBP	4.84	□□□□□ -1.63
CD44-231	ENST00000531110	GSK3B	P49841	420 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	SULT1A1	P50225	295 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	POLR2H	P52434	150 aa	Known RBP	4.84	□□□□□ -1.63
CD44-231	ENST00000531110	EFNA5	P52803	228 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	GAS1	P54826	345 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	MLF1	P58340	268 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	RPL32	P62910	135 aa	Known RBP	4.84	□□□□□ -1.63
CD44-231	ENST00000531110	HYAL1	Q12794	435 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	C1D	Q13901	141 aa	Known RBP	4.84	□□□□□ -1.63
CD44-231	ENST00000531110	GPNMB	Q14956	572 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	IAH1	Q2TAA2	248 aa	Predicted RBP	4.84	□□□□□ -1.63
CD44-231	ENST00000531110	ACSM3	Q53FZ2	586 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	LRRC10	Q5BKY1	277 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	ZNF57	Q68EA5	555 aa	Predicted RBP	4.84	□□□□□ -1.63
CD44-231	ENST00000531110	CNIH2	Q6PI25	160 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	H1FNT	Q75WM6	255 aa	Predicted RBP	4.84	□□□□□ -1.63
CD44-231	ENST00000531110		Q7L0L9	218 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	OLIG3	Q7RTU3	272 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	CUZD1	Q86UP6	607 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	TMEM173	Q86WV6	379 aa	Predicted RBP	4.84	□□□□□ -1.63
CD44-231	ENST00000531110	TGIF2LY	Q8IUE0	185 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	CSNK1A1L	Q8N752	337 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	COX18	Q8N8Q8	333 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	NOXO1	Q8NFA2	376 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	OR4B1	Q8NGF8	309 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	OR4A4P	Q8NGN8	299 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	SFXN5	Q8TD22	340 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	VN1R17P	Q8TDU5	208 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	UBTD2	Q8WUN7	234 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	EEF1AKMT1	Q8WVE0	214 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	PCNP	Q8WW12	178 aa	Known RBP	4.84	□□□□□ -1.63
CD44-231	ENST00000531110	RXFP2	Q8WXD0	754 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	LRRC58	Q96CX6	371 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	MUCL1	Q96DR8	90 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	RTP4	Q96DX8	246 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	TSSK3	Q96PN8	268 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	DUX5	Q96PT3	197 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	ACCS	Q96QU6	501 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	ST6GALNAC5	Q9BVH7	336 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	LINC00470	Q9BZP3	86 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	LAT2	Q9GZY6	243 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	OR52D1	Q9H346	318 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	TAF9B	Q9HBM6	251 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	APMAP	Q9HDC9	416 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	RPS10P5	Q9NQ39	176 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	CTNNBIP1	Q9NSA3	81 aa	Predicted RBP	4.84	□□□□□ -1.63
CD44-231	ENST00000531110	DMAC2	Q9NW81	257 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	ZNF230	Q9UIE0	474 aa	Predicted RBP	4.84	□□□□□ -1.63
CD44-231	ENST00000531110	RALY	Q9UKM9	306 aa	Known RBP	4.84	□□□□□ -1.63
CD44-231	ENST00000531110	TBX21	Q9UL17	535 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	TRAPPC2L	Q9UL33	140 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	ICAM5	Q9UMF0	924 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	SIGLEC7	Q9Y286	467 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	SLC17A4	Q9Y2C5	497 aa		4.84	□□□□□ -1.63
CD44-231	ENST00000531110	SCN7A	Q01118	1682 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	IGLV5-52	A0A0A0MRZ9	124 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	BORCS7-ASMT	A0A0B4J1R7	106 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	IGHV1-69-2	A0A0G2JMI3	117 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	EDDM13	A0A1B0GTR0	161 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	TRDV1	A0A1B0GX56	115 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	C15orf65	H3BRN8	121 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	ZNF593	O00488	134 aa	Predicted RBP	4.83	□□□□□ -1.64
CD44-231	ENST00000531110	GABRP	O00591	440 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	CYB561D2	O14569	222 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	TIMM23	O14925	209 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	TPST2	O60704	377 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	EED	O75530	441 aa	Known RBP	4.83	□□□□□ -1.64
CD44-231	ENST00000531110	PROSC	O94903	275 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	UBL3	O95164	117 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	GJB5	O95377	273 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	VTN	P04004	478 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	RLN1	P04808	185 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	OR5G3	P0C626	314 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	SFTA3	P0C7M3	94 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	LIPC	P11150	499 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	SELE	P16581	610 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	CEL	P19835	753 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	PSMB1	P20618	241 aa	Known RBP	4.83	□□□□□ -1.64
CD44-231	ENST00000531110	OMG	P23515	440 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	NFYB	P25208	207 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	ATP6V0C	P27449	155 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	CCKBR	P32239	447 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	APLNR	P35414	380 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	ELK3	P41970	407 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	CSRP3	P50461	194 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	RND2	P52198	227 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	PDX1	P52945	283 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	ART1	P52961	327 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	DSCR9	P59020	149 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	KRTAP1-1	Q07627	177 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	GABRA6	Q16445	453 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	SYPL1	Q16563	259 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	SLC25A53	Q5H9E4	307 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	C9orf50	Q5SZB4	431 aa		4.83	□□□□□ -1.64
CD44-231	ENST00000531110	OTUD3	Q5T2D3	398 aa	Predicted RBP	4.83	□□□□□ -1.64
CD44-231	ENST00000531110	OLFML2A	Q68BL7	652 aa		4.83	□□□□□ -1.64

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