RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 WNT2BQ93097 391 aa14.04□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 PIGQQ9BRB3 760 aa14.04□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 ANGPTL4Q9BY76 406 aa14.04□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 CYC1P08574 325 aa14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 HOXB5P09067 269 aa14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 GUCA1AP43080 201 aaPredicted RBP14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 CHRFAM7AQ494W8 412 aa14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 OR9K2Q8NGE7 335 aa14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 FBXO17Q96EF6 278 aa14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 ZNF837Q96EG3 531 aaPredicted RBP14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 IMMP1LQ96LU5 166 aa14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 RBM24Q9BX46 236 aaKnown RBP14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 DNAJB11Q9UBS4 358 aa14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 ZNF629Q9UEG4 869 aaPredicted RBP14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 FOXD3Q9UJU5 478 aaPredicted RBP14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 IGHV1-45A0A0A0MS14 117 aa14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 DHRS7CA6NNS2 312 aa14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 M0R135 149 aa14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 GFRA3O60609 400 aa14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 EIF3GO75821 320 aaKnown RBP eCLIP14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 UMODP07911 640 aa14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 ACAA1P09110 424 aaPredicted RBP14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 LIFP15018 202 aa14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 CPT2P23786 658 aa14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 SNAI3Q3KNW1 292 aa14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 DHRS13Q6UX07 377 aa14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 ZNF799Q96GE5 643 aa14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 HDHD3Q9BSH5 251 aaPredicted RBP14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 ADAT1Q9BUB4 502 aaKnown RBP14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 WDR54Q9H977 334 aa14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 MMP26Q9NRE1 261 aa14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 CARHSP1Q9Y2V2 147 aaKnown RBP14.03□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 KNG1P01042 644 aa14.02□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 FGF5P12034 268 aa14.02□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 SUCLG1P53597 346 aaKnown RBP14.02□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 RBM39Q14498 530 aaKnown RBP14.02□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 FAM76BQ5HYJ3 339 aa14.02□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 ADAMTS17Q8TE56 1095 aa14.02□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 Q96M66 194 aa14.02□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 ELL3Q9HB65 397 aaPredicted RBP14.02□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 GSKIPQ9P0R6 139 aa14.02□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 LPAR3Q9UBY5 353 aa14.02□□□□□ -0.16
MSH5-SAPCD1-208ENST00000498473 BOD1L1Q8NFC6 3051 aa14.02□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 NUDT19A8MXV4 375 aa14.02□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 NPIPA2E9PIF3 369 aa14.02□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 NPIPA3F8WFD2 350 aa14.02□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 G3V3Y1 287 aa14.02□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 RRP8O43159 456 aaKnown RBP14.02□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 VAMP5O95183 116 aa14.02□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 IGHV2-70P01814 119 aa14.02□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 HKR1P10072 659 aa14.02□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 RFC3P40938 356 aa14.02□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 DSCR4P56555 118 aaPredicted RBP14.02□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 PPA1Q15181 289 aa14.02□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 RAET1LQ5VY80 246 aa14.02□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 SVBPQ8N300 66 aa14.02□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 C10orf35Q96D05 121 aa14.02□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 TLNRD1Q9H1K6 362 aa14.02□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 SH2D2AQ9NP31 389 aa14.02□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 OR2S2Q9NQN1 319 aa14.02□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 GPR173Q9NS66 373 aa14.02□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 ZNF701Q9NV72 531 aaPredicted RBP14.02□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 A0A0J9YW62 118 aa14.01□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 ZNF705EA8MWA4 302 aaPredicted RBP14.01□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 COX6A1P12074 109 aa14.01□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 ZNF708P17019 499 aa14.01□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 GABRR1P24046 479 aa14.01□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 ACKR3P25106 362 aa14.01□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 PJVKQ0ZLH3 352 aa14.01□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 ARL6IP1Q15041 203 aa14.01□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 OPN5Q6U736 354 aa14.01□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 DMBX1Q8NFW5 382 aa14.01□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 SEMA6DQ8NFY4 1073 aa14.01□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 SMIM8Q96KF7 97 aa14.01□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 CNTNAP3BQ96NU0 1288 aa14.01□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 S100A13Q99584 98 aa14.01□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 ZNF700Q9H0M5 742 aa14.01□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 TMEM231Q9H6L2 316 aa14.01□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 ACKR4Q9NPB9 350 aa14.01□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 PLEK2Q9NYT0 353 aa14.01□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 C14orf166Q9Y224 244 aaKnown RBP14.01□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 IFNA2P01563 188 aa14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 CRYGSP22914 178 aa14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 S100A10P60903 97 aa14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 RPL7L1Q6DKI1 246 aaKnown RBP14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 RPUSD3Q6P087 351 aaKnown RBP14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 TMEM88Q6PEY1 159 aa14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 IL34Q6ZMJ4 242 aa14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 SULF2Q8IWU5 870 aa14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 C20orf196Q8IYI0 205 aa14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 ZNF2Q9BSG1 426 aaPredicted RBP14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 NAA11Q9BSU3 229 aaPredicted RBP14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 PAPOLGQ9BWT3 736 aaKnown RBP14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 SRXN1Q9BYN0 137 aa14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 CNTNAP3Q9BZ76 1288 aa14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 LIME1Q9H400 295 aa14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 DECR2Q9NUI1 292 aa14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 PLA2G2EQ9NZK7 142 aa14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 ZNF581Q9P0T4 197 aa14□□□□□ -0.17
MSH5-SAPCD1-208ENST00000498473 SDK2Q58EX2 2172 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms