RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 PID1Q7Z2X4 250 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ABHD12BQ7Z5M8 362 aaPredicted RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 TMEM144Q7Z5S9 345 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 LRRC28Q86X40 367 aaPredicted RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF573Q86YE8 665 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 SERPINA12Q8IW75 414 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 BAP18Q8IXM2 172 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 PRR22Q8IZ63 422 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 HS3ST5Q8IZT8 346 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 C8orf59Q8N0T1 100 aaPredicted RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 C11orf42Q8N5U0 333 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 METTL13Q8N6R0 699 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 PQLC3Q8N755 202 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 MFSD9Q8NBP5 474 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 HSD17B11Q8NBQ5 300 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 UXS1Q8NBZ7 420 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 KLHL30-AS1Q8NEE0 82 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 FBXL13Q8NEE6 735 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 OR4K14Q8NGD5 310 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 OR5B17Q8NGF7 314 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 OR5L2Q8NGL0 311 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 OR10D4PQ8NGN7 298 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 OR1L6Q8NGR2 347 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 OR2T4Q8NH00 348 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 OR8U1Q8NH10 309 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 OR52J3Q8NH60 311 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 TERB2Q8NHR7 220 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 CD200R1Q8TD46 325 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 GPR151Q8TDV0 419 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 GPR148Q8TDV2 347 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 CXorf40AQ8TE69 158 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 TFB1MQ8WVM0 346 aaKnown RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 SELENOMQ8WWX9 145 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ACOT11Q8WXI4 607 aaPredicted RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 RAB1CQ92928 201 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ESAMQ96AP7 390 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 CREB3L1Q96BA8 519 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ECHDC3Q96DC8 303 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 CCDC126Q96EE4 140 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ZBED6CLQ96FA7 236 aaPredicted RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 PPP1R16AQ96I34 528 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ITCHQ96J02 903 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 FCRL1Q96LA6 429 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 TEX37Q96LM6 180 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 SAMD8Q96LT4 415 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 NOL4LQ96MY1 436 aaPredicted RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 SLC38A2Q96QD8 506 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 OR8B4Q96RC9 309 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 TSNAXQ99598 290 aaKnown RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 SDHCQ99643 169 aaPredicted RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 NIPSNAP1Q9BPW8 284 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 UTP23Q9BRU9 249 aaKnown RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 SLC35A5Q9BS91 424 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ADAT1Q9BUB4 502 aaKnown RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF426Q9BUY5 554 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 TPPP3Q9BW30 176 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ANGPTL4Q9BY76 406 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 MRPL13Q9BYD1 178 aaKnown RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ULBP1Q9BZM6 244 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 C20orf85Q9H1P6 137 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 CDC42EP4Q9H3Q1 356 aaKnown RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 SRMSQ9H3Y6 488 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 RGCCQ9H4X1 137 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 FAM124BQ9H5Z6 455 aaPredicted RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF665Q9H7R5 613 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ANKRA2Q9H9E1 313 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 WFDC1Q9HC57 220 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 CSNK1G1Q9HCP0 422 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 MIEF1Q9NQG6 463 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 NANSQ9NR45 359 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 CHRAC1Q9NRG0 131 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 YAE1D1Q9NRH1 226 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 TNFRSF19Q9NS68 423 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ABCB8Q9NUT2 735 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 IMP3Q9NV31 184 aaKnown RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 MTCH1Q9NZJ7 389 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 COMMD3Q9UBI1 195 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF222Q9UK12 451 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 MRTO4Q9UKD2 239 aaKnown RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 CELA1Q9UNI1 258 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 GPR132Q9UNW8 380 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 KCNK6Q9Y257 313 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 PRG3Q9Y2Y8 225 aaPredicted RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 YARS2Q9Y2Z4 477 aaKnown RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ALG6Q9Y672 507 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 TEX264Q9Y6I9 313 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 TGP01266 2768 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 SDK2Q58EX2 2172 aa1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ZFC3H1O60293 1989 aaKnown RBP1.65□□□□□ -2.15
HMGB1-208ENST00000490788 ABCA7Q8IZY2 2146 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 AKAP9Q99996 3911 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 TRBV7-9A0A0J9YWB2 115 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 A0A0J9YYE9 177 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 GLYATL1P3A0A0U1RQE8 302 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 PNMA8CA0A1B0GUJ8 204 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 C13orf42A0A1B0GVH6 325 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 EXOC1LA0A1B0GW35 172 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 A0A1W2PPV4 95 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 MYBPHLA2RUH7 354 aa1.64□□□□□ -2.15
HMGB1-208ENST00000490788 HELTA6NFD8 242 aa1.64□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms