RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 IFNA2P01563 188 aa15.49■□□□□ 0.07
SHH-203ENST00000435425 PSG2P11465 335 aa15.49■□□□□ 0.07
SHH-203ENST00000435425 MPZP25189 248 aa15.49■□□□□ 0.07
SHH-203ENST00000435425 WNT4P56705 351 aa15.49■□□□□ 0.07
SHH-203ENST00000435425 PAX2Q02962 417 aa15.49■□□□□ 0.07
SHH-203ENST00000435425 IL24Q13007 206 aa15.49■□□□□ 0.07
SHH-203ENST00000435425 CD276Q5ZPR3 534 aa15.49■□□□□ 0.07
SHH-203ENST00000435425 LHFPL2Q6ZUX7 228 aa15.49■□□□□ 0.07
SHH-203ENST00000435425 RNF144BQ7Z419 303 aa15.49■□□□□ 0.07
SHH-203ENST00000435425 DNAAF1Q8NEP3 725 aa15.49■□□□□ 0.07
SHH-203ENST00000435425 OR5D14Q8NGL3 314 aa15.49■□□□□ 0.07
SHH-203ENST00000435425 OR13C5Q8NGS8 318 aa15.49■□□□□ 0.07
SHH-203ENST00000435425 GHSRQ92847 366 aa15.49■□□□□ 0.07
SHH-203ENST00000435425 SMIM19Q96E16 107 aa15.49■□□□□ 0.07
SHH-203ENST00000435425 GAFA1Q96PS6 74 aa15.49■□□□□ 0.07
SHH-203ENST00000435425 OR14J1Q9UGF5 321 aa15.49■□□□□ 0.07
SHH-203ENST00000435425 RAB26Q9ULW5 256 aa15.49■□□□□ 0.07
SHH-203ENST00000435425 ZNF281Q9Y2X9 895 aa15.49■□□□□ 0.07
SHH-203ENST00000435425 PCDHGB5Q9Y5G0 923 aa15.49■□□□□ 0.07
SHH-203ENST00000435425 ZFHX3Q15911 3703 aa15.48■□□□□ 0.07
SHH-203ENST00000435425 IGKV1D-17A0A075B6S4 117 aa15.48■□□□□ 0.07
SHH-203ENST00000435425 RFPL4AA6NLU0 287 aa15.48■□□□□ 0.07
SHH-203ENST00000435425 RFPL4AL1F8VTS6 287 aa15.48■□□□□ 0.07
SHH-203ENST00000435425 SPRY1O43609 319 aaPredicted RBP15.48■□□□□ 0.07
SHH-203ENST00000435425 NOS1APO75052 506 aaPredicted RBP15.48■□□□□ 0.07
SHH-203ENST00000435425 HCKP08631 526 aa15.48■□□□□ 0.07
SHH-203ENST00000435425 CEBPDP49716 269 aaPredicted RBP15.48■□□□□ 0.07
SHH-203ENST00000435425 IL13RA1P78552 427 aa15.48■□□□□ 0.07
SHH-203ENST00000435425 SMIM21Q3B7S5 101 aa15.48■□□□□ 0.07
SHH-203ENST00000435425 LRRC10Q5BKY1 277 aa15.48■□□□□ 0.07
SHH-203ENST00000435425 ATPAF1Q5TC12 328 aaPredicted RBP15.48■□□□□ 0.07
SHH-203ENST00000435425 DMKNQ6E0U4 476 aaPredicted RBP15.48■□□□□ 0.07
SHH-203ENST00000435425 ZNF788Q6ZQV5 615 aa15.48■□□□□ 0.07
SHH-203ENST00000435425 BTN2A1Q7KYR7 527 aa15.48■□□□□ 0.07
SHH-203ENST00000435425 PARP16Q8N5Y8 322 aa15.48■□□□□ 0.07
SHH-203ENST00000435425 RPS4Y2Q8TD47 263 aa15.48■□□□□ 0.07
SHH-203ENST00000435425 H1FXQ92522 213 aaKnown RBP15.48■□□□□ 0.07
SHH-203ENST00000435425 SPSB1Q96BD6 273 aa15.48■□□□□ 0.07
SHH-203ENST00000435425 MED30Q96HR3 178 aa15.48■□□□□ 0.07
SHH-203ENST00000435425 CEP19Q96LK0 163 aa15.48■□□□□ 0.07
SHH-203ENST00000435425 NRIP2Q9BQI9 281 aa15.48■□□□□ 0.07
SHH-203ENST00000435425 MTCH1Q9NZJ7 389 aa15.48■□□□□ 0.07
SHH-203ENST00000435425 METRNQ9UJH8 293 aa15.48■□□□□ 0.07
SHH-203ENST00000435425 KIR2DS1A0A191URI9 304 aa15.47■□□□□ 0.07
SHH-203ENST00000435425 F8VVB4 439 aa15.47■□□□□ 0.07
SHH-203ENST00000435425 F8VWA3 439 aa15.47■□□□□ 0.07
SHH-203ENST00000435425 ENSAO43768 121 aaKnown RBP15.47■□□□□ 0.07
SHH-203ENST00000435425 CYB5AP00167 134 aa15.47■□□□□ 0.07
SHH-203ENST00000435425 CD2P06729 351 aa15.47■□□□□ 0.07
SHH-203ENST00000435425 ACAA1P09110 424 aaPredicted RBP15.47■□□□□ 0.07
SHH-203ENST00000435425 CALCBP10092 127 aa15.47■□□□□ 0.07
SHH-203ENST00000435425 TAS2R43P59537 309 aa15.47■□□□□ 0.07
SHH-203ENST00000435425 PAX8Q06710 450 aa15.47■□□□□ 0.07
SHH-203ENST00000435425 DOC2BQ14184 412 aa15.47■□□□□ 0.07
SHH-203ENST00000435425 DGUOKQ16854 277 aa15.47■□□□□ 0.07
SHH-203ENST00000435425 C1QL2Q7Z5L3 287 aa15.47■□□□□ 0.07
SHH-203ENST00000435425 MKXQ8IYA7 352 aa15.47■□□□□ 0.07
SHH-203ENST00000435425 TEX29Q8N6K0 151 aa15.47■□□□□ 0.07
SHH-203ENST00000435425 ZNRF1Q8ND25 227 aa15.47■□□□□ 0.07
SHH-203ENST00000435425 OR5D18Q8NGL1 313 aa15.47■□□□□ 0.07
SHH-203ENST00000435425 NANPQ8TBE9 248 aa15.47■□□□□ 0.07
SHH-203ENST00000435425 ORAI1Q96D31 301 aa15.47■□□□□ 0.07
SHH-203ENST00000435425 MND1Q9BWT6 205 aa15.47■□□□□ 0.07
SHH-203ENST00000435425 CCDC90BQ9GZT6 254 aa15.47■□□□□ 0.07
SHH-203ENST00000435425 DNTTIP1Q9H147 329 aa15.47■□□□□ 0.07
SHH-203ENST00000435425 NEK6Q9HC98 313 aa15.47■□□□□ 0.07
SHH-203ENST00000435425 TAS2R4Q9NYW5 299 aa15.47■□□□□ 0.07
SHH-203ENST00000435425 SULT1B1O43704 296 aa15.46■□□□□ 0.07
SHH-203ENST00000435425 ANGPTL7O43827 346 aa15.46■□□□□ 0.07
SHH-203ENST00000435425 NDUFB7P17568 137 aa15.46■□□□□ 0.07
SHH-203ENST00000435425 CELP19835 753 aa15.46■□□□□ 0.07
SHH-203ENST00000435425 PRDX2P32119 198 aa15.46■□□□□ 0.07
SHH-203ENST00000435425 CAPZA1P52907 286 aa15.46■□□□□ 0.07
SHH-203ENST00000435425 SLC35A2P78381 396 aa15.46■□□□□ 0.07
SHH-203ENST00000435425 ARMCX4Q5H9R4 360 aa15.46■□□□□ 0.07
SHH-203ENST00000435425 SATL1Q86VE3 508 aa15.46■□□□□ 0.07
SHH-203ENST00000435425 CD177Q8N6Q3 437 aa15.46■□□□□ 0.07
SHH-203ENST00000435425 TMEM185AQ8NFB2 350 aa15.46■□□□□ 0.07
SHH-203ENST00000435425 TMEM106AQ96A25 262 aa15.46■□□□□ 0.07
SHH-203ENST00000435425 OCEL1Q9H607 264 aa15.46■□□□□ 0.07
SHH-203ENST00000435425 ELL3Q9HB65 397 aaPredicted RBP15.46■□□□□ 0.07
SHH-203ENST00000435425 SLC25A10Q9UBX3 287 aaPredicted RBP15.46■□□□□ 0.07
SHH-203ENST00000435425 ZNF222Q9UK12 451 aa15.46■□□□□ 0.07
SHH-203ENST00000435425 IGHV3OR16-10A0A075B7F0 116 aa15.45■□□□□ 0.06
SHH-203ENST00000435425 SIGLEC5O15389 551 aa15.45■□□□□ 0.06
SHH-203ENST00000435425 RGS10O43665 173 aa15.45■□□□□ 0.06
SHH-203ENST00000435425 MT-ND2P03891 347 aa15.45■□□□□ 0.06
SHH-203ENST00000435425 RAB3AP20336 220 aa15.45■□□□□ 0.06
SHH-203ENST00000435425 BCL3P20749 454 aa15.45■□□□□ 0.06
SHH-203ENST00000435425 CRHBPP24387 322 aa15.45■□□□□ 0.06
SHH-203ENST00000435425 NPBWR2P48146 333 aa15.45■□□□□ 0.06
SHH-203ENST00000435425 SNU13P55769 128 aaKnown RBP15.45■□□□□ 0.06
SHH-203ENST00000435425 FGF12P61328 243 aa15.45■□□□□ 0.06
SHH-203ENST00000435425 ERVK11-1P61568 191 aa15.45■□□□□ 0.06
SHH-203ENST00000435425 PDZK1IP1Q13113 114 aa15.45■□□□□ 0.06
SHH-203ENST00000435425 MED22Q15528 200 aa15.45■□□□□ 0.06
SHH-203ENST00000435425 PNLDC1Q8NA58 520 aaKnown RBP15.45■□□□□ 0.06
SHH-203ENST00000435425 EMG1Q92979 244 aaKnown RBP15.45■□□□□ 0.06
SHH-203ENST00000435425 DACT3Q96B18 629 aaPredicted RBP15.45■□□□□ 0.06
SHH-203ENST00000435425 PGLYRP3Q96LB9 341 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms