RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 ZMAT3Q9HA38 289 aaKnown RBP5.44□□□□□ -1.54
SCN1A-203ENST00000409050 STARD10Q9Y365 291 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 MTCH2Q9Y6C9 303 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 CXorf65A6NEN9 183 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 ZNF785A8K8V0 405 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 TRDCB7Z8K6 153 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 RER1O15258 196 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 CRHP06850 196 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 NGFRP08138 427 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 HTR1DP28221 377 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 OR1D5P58170 312 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 FOXF1Q12946 379 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 CCSMST1Q4G0I0 132 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 C9orf135Q5VTT2 229 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 ETV3LQ6ZN32 361 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 LRP11Q86VZ4 500 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 OR13C5Q8NGS8 318 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 SLC25A40Q8TBP6 338 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 DNAJB12Q9NXW2 375 aaKnown RBP5.44□□□□□ -1.54
SCN1A-203ENST00000409050 MYH15Q9Y2K3 1946 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 CTXND1A0A1B0GTU2 59 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 UBE2L5PA0A1B0GUS4 154 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 ZNF716A6NP11 495 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 CORTO00230 105 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 FCN1O00602 326 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 SBK3P0C264 359 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 IAPPP10997 89 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 TMEFF1Q8IYR6 380 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 H1FOOQ8IZA3 346 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-203ENST00000409050 OR10G4Q8NGN3 311 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 OR10G9Q8NGN4 311 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 OR10G7Q8NGN6 311 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 LILRB1Q8NHL6 650 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-203ENST00000409050 P2RX4Q99571 388 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 MBNL1Q9NR56 388 aaKnown RBP5.44□□□□□ -1.54
SCN1A-203ENST00000409050 TMEM38BQ9NVV0 291 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 DOT1LQ8TEK3 1739 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 A0A1B0GTQ1 180 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 LNP1A1A4G5 178 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 M0R296 226 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 AQP7O14520 342 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 FCMRO60667 390 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 CTSVO60911 334 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 SLC25A5P05141 298 aaKnown RBP5.44□□□□□ -1.54
SCN1A-203ENST00000409050 HOXB1P14653 301 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-203ENST00000409050 ST6GAL1P15907 406 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 LPAR6P43657 344 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 PXNP49023 591 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-203ENST00000409050 SULT1A1P50225 295 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 SSPNQ14714 243 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 ZIC1Q15915 447 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 PMCHL1Q16048 86 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 WDR38Q5JTN6 314 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 SEZ6L2Q6UXD5 910 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 OR4A4PQ8NGN8 299 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 OR5M9Q8NGP3 310 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 ZNF596Q8TC21 504 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 C1QTNF6Q9BXI9 259 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 GPR87Q9BY21 358 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 OR5V1Q9UGF6 321 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 LOXL2Q9Y4K0 774 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 TRAV38-1A0A0B4J264 116 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 C7orf66A4D0T2 115 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 FAM90A26D6RGX4 464 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 SYNGR2O43760 224 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 CD99P14209 185 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 HOXA6P31267 233 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 VEGFBP49765 207 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 RPL11P62913 178 aaKnown RBP5.44□□□□□ -1.54
SCN1A-203ENST00000409050 KIAA0040Q15053 153 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 CEACAM16Q2WEN9 425 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 ZNF468Q5VIY5 522 aaPredicted RBP5.44□□□□□ -1.54
SCN1A-203ENST00000409050 FOXB2Q5VYV0 432 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 LINC00696Q6ZRV3 163 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 VASH2Q86V25 355 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 SIRT6Q8N6T7 355 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 C2CD4CQ8TF44 421 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 ADIPOR1Q96A54 375 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 TMEM70Q9BUB7 260 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 PTDSS2Q9BVG9 487 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 C19orf24Q9BVV8 132 aa5.44□□□□□ -1.54
SCN1A-203ENST00000409050 SDCBPO00560 298 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-203ENST00000409050 CXorf1O96002 111 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 GCGP01275 180 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 NQO2P16083 231 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 FSTP19883 344 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 OPRM1P35372 400 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 MPLP40238 635 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 RPS20P60866 119 aaKnown RBP5.43□□□□□ -1.54
SCN1A-203ENST00000409050 TMEM267Q0VDI3 215 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-203ENST00000409050 GGTLC2Q14390 218 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 HLA-DRB5Q30154 266 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 PDPNQ86YL7 162 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 OR10D4PQ8NGN7 298 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 GPBAR1Q8TDU6 330 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 ZNF768Q9H5H4 540 aaKnown RBP5.43□□□□□ -1.54
SCN1A-203ENST00000409050 SLC52A3Q9NQ40 469 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 RREB1Q92766 1687 aa5.43□□□□□ -1.54
SCN1A-203ENST00000409050 LRP5O75197 1615 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms