RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 F8VWA3 439 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 NPIPB9F8W1W9 429 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 B3GALT4O96024 378 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 FPR2P25090 351 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 RPL12P30050 165 aaKnown RBP5.74□□□□□ -1.49
VPS35-201ENST00000299138 PNRC1Q12796 327 aaPredicted RBP5.74□□□□□ -1.49
VPS35-201ENST00000299138 RPEL1Q2QD12 228 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 HFEQ30201 348 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 SLC35E1Q96K37 410 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 AQP10Q96PS8 301 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 MED20Q9H944 212 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 CTSFQ9UBX1 484 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 HSF4Q9ULV5 492 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 MMP17Q9ULZ9 603 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 TRAV36DV7A0A075B6V5 113 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 DUXBA0A1W2PPF3 345 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 DNASE2O00115 360 aaPredicted RBP5.74□□□□□ -1.49
VPS35-201ENST00000299138 BMP5P22003 454 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 HAAOP46952 286 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 MTCP1P56278 107 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 PIGPP57054 158 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 HTRA3P83110 453 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 OR7E24Q6IFN5 339 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 NUDT8Q8WV74 236 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 RLN3Q8WXF3 142 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 CFHR5Q9BXR6 569 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 GAL3ST2Q9H3Q3 398 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 TREM2Q9NZC2 230 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 LPAR3Q9UBY5 353 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 OR52A4PA6NMU1 304 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 SELENOFO60613 162 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 CTAG2O75638 210 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 LYZL6O75951 148 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 OPN1LWP04000 364 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 CRISP2P16562 243 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 CXCL2P19875 107 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 SNRPNP63162 240 aaKnown RBP5.74□□□□□ -1.49
VPS35-201ENST00000299138 SLC25A35Q3KQZ1 300 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 ZNF506Q5JVG8 444 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 SSX8Q7RTT4 187 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 OR6C1Q96RD1 312 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 GPR174Q9BXC1 333 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 MRPL37Q9BZE1 423 aaKnown RBP5.74□□□□□ -1.49
VPS35-201ENST00000299138 CHRNA10Q9GZZ6 450 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 GPR55Q9Y2T6 319 aaPredicted RBP5.74□□□□□ -1.49
VPS35-201ENST00000299138 PLXNA3P51805 1871 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 SERPINE3A8MV23 424 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 PPICP45877 212 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 SELENOPP49908 381 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 CNN1P51911 297 aaKnown RBP5.74□□□□□ -1.49
VPS35-201ENST00000299138 ZNF133P52736 654 aaPredicted RBP5.74□□□□□ -1.49
VPS35-201ENST00000299138 ATP1B3P54709 279 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 GPR18Q14330 331 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 TEAD2Q15562 447 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 HLA-DRB5Q30154 266 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 NKAIN1Q4KMZ8 207 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 SPATA45Q537H7 98 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 TRMT12Q53H54 448 aaKnown RBP5.74□□□□□ -1.49
VPS35-201ENST00000299138 C10orf91Q5T1B1 145 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 AMMECR1LQ6DCA0 310 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 SLC36A1Q7Z2H8 476 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 MYPOPQ86VE0 399 aaPredicted RBP5.74□□□□□ -1.49
VPS35-201ENST00000299138 BEND2Q8NDZ0 799 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 MRAPQ8TCY5 172 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 NUDCD2Q8WVJ2 157 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 SLC25A38Q96DW6 304 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 WDR92Q96MX6 357 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 PRSS27Q9BQR3 290 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 NECAP2Q9NVZ3 263 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 BEX4Q9NWD9 120 aaPredicted RBP5.74□□□□□ -1.49
VPS35-201ENST00000299138 FAM206AQ9NX38 181 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 SLC5A6Q9Y289 635 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 DMRT1Q9Y5R6 373 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 TMEM269A0A1B0GVZ9 245 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 SH2D7A6NKC9 451 aaPredicted RBP5.73□□□□□ -1.49
VPS35-201ENST00000299138 FRS3O43559 492 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 SDHBP21912 280 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 DCDP81605 110 aaKnown RBP5.73□□□□□ -1.49
VPS35-201ENST00000299138 FAAP20Q6NZ36 180 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 ZNF841Q6ZN19 808 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 C1QL4Q86Z23 238 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 ABHD3Q8WU67 409 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 MRPS24Q96EL2 167 aaKnown RBP5.73□□□□□ -1.49
VPS35-201ENST00000299138 MVB12AQ96EY5 273 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 OR52A1Q9UKL2 312 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 TGIF2-C20orf24A0A0A6YYL0 155 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 DHRS7CA6NNS2 312 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 ST8SIA3O43173 380 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 SLC25A5P05141 298 aaKnown RBP5.73□□□□□ -1.49
VPS35-201ENST00000299138 HKR1P10072 659 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 TBXA2RP21731 343 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 LBX1P52954 281 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 ZP1P60852 638 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 MUC20Q8N307 709 aaPredicted RBP5.73□□□□□ -1.49
VPS35-201ENST00000299138 ST6GALNAC3Q8NDV1 305 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 OR4C13Q8NGP0 309 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 KIRREL1Q96J84 757 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 SMIM14Q96QK8 99 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 LAT2Q9GZY6 243 aa5.73□□□□□ -1.49
VPS35-201ENST00000299138 S1PR5Q9H228 398 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms