RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 OR10Z1Q8NGY1 313 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 RHBDD1Q8TEB9 315 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 C2CD4CQ8TF44 421 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 HAS2Q92819 552 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 EMG1Q92979 244 aaKnown RBP6.54□□□□□ -1.36
LIMA1-213ENST00000552720 TOMM40LQ969M1 308 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 MARS2Q96GW9 593 aaKnown RBP6.54□□□□□ -1.36
LIMA1-213ENST00000552720 TAF9BQ9HBM6 251 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 PLEKHJ1Q9NW61 149 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 CARHSP1Q9Y2V2 147 aaKnown RBP6.54□□□□□ -1.36
LIMA1-213ENST00000552720 LSM5Q9Y4Y9 91 aaKnown RBP6.54□□□□□ -1.36
LIMA1-213ENST00000552720 FAM186AA6NE01 2351 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 A0A0J9YW62 118 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 NPIPA2E9PIF3 369 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 NPIPA3F8WFD2 350 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 DHHO43323 396 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 TLX3O43711 291 aaPredicted RBP6.54□□□□□ -1.36
LIMA1-213ENST00000552720 IFNA2P01563 188 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 CPT2P23786 658 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 CD80P33681 288 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 AKR1C3P42330 323 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 GUCA1AP43080 201 aaPredicted RBP6.54□□□□□ -1.36
LIMA1-213ENST00000552720 ALDH3B1P43353 468 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 CBX5P45973 191 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 NOVA1P51513 510 aaKnown RBP6.54□□□□□ -1.36
LIMA1-213ENST00000552720 AKR1D1P51857 326 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 MTCP1P56278 107 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 LSM6P62312 80 aaKnown RBP6.54□□□□□ -1.36
LIMA1-213ENST00000552720 ESPL1Q14674 2120 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 ZNF239Q16600 458 aaKnown RBP6.54□□□□□ -1.36
LIMA1-213ENST00000552720 AKIRIN2Q53H80 203 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 ZNF468Q5VIY5 522 aaPredicted RBP6.54□□□□□ -1.36
LIMA1-213ENST00000552720 RPUSD3Q6P087 351 aaKnown RBP6.54□□□□□ -1.36
LIMA1-213ENST00000552720 SLC16A14Q7RTX9 510 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 C5orf24Q7Z6I8 188 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 TMEM123Q8N131 208 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 ZFP82Q8N141 532 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 ZIC4Q8N9L1 334 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 OR9K2Q8NGE7 335 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 OR5T2Q8NGG2 359 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 SLC25A43Q8WUT9 341 aaPredicted RBP6.54□□□□□ -1.36
LIMA1-213ENST00000552720 TMEM54Q969K7 222 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 ERGIC1Q969X5 290 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 TM2D1Q9BX74 207 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 SRXN1Q9BYN0 137 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 CNTNAP3Q9BZ76 1288 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.54□□□□□ -1.36
LIMA1-213ENST00000552720 FBXL17Q9UF56 701 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 MLXQ9UH92 298 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 C14orf166Q9Y224 244 aaKnown RBP6.54□□□□□ -1.36
LIMA1-213ENST00000552720 PCDHGA1Q9Y5H4 931 aa6.54□□□□□ -1.36
LIMA1-213ENST00000552720 TNRC6BQ9UPQ9 1833 aaKnown RBP6.53□□□□□ -1.36
LIMA1-213ENST00000552720 A0A0U1RQV5 110 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 LOC102725191A0A1B0GVB3 256 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 MED19A0JLT2 244 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-213ENST00000552720 CCDC85CA6NKD9 419 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 K7ESF4 209 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 TOX3O15405 576 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-213ENST00000552720 ZIC3O60481 467 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 MTRF1O75570 445 aaKnown RBP6.53□□□□□ -1.36
LIMA1-213ENST00000552720 OR8U9P0C7N5 309 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 ADH6P28332 368 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 EPHA8P29322 1005 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-213ENST00000552720 RPL12P30050 165 aaKnown RBP6.53□□□□□ -1.36
LIMA1-213ENST00000552720 FCGR2CP31995 323 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 RBMXP38159 391 aaKnown RBP6.53□□□□□ -1.36
LIMA1-213ENST00000552720 EIF1P41567 113 aaKnown RBP6.53□□□□□ -1.36
LIMA1-213ENST00000552720 FXYD4P59646 89 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 C10orf128Q5T292 105 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 GGNBP1Q5YKI7 109 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 DHRS7BQ6IAN0 325 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-213ENST00000552720 ZNF774Q6NX45 483 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 SULF2Q8IWU5 870 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 OR8U1Q8NH10 309 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 REEP6Q96HR9 211 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 SMIM8Q96KF7 97 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 Q96M66 194 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 SCGB3A2Q96PL1 93 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 SULT4A1Q9BR01 284 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 ULBP2Q9BZM5 246 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 ESRP2Q9H6T0 727 aaKnown RBP6.53□□□□□ -1.36
LIMA1-213ENST00000552720 UBE2ZQ9H832 354 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-213ENST00000552720 RCC2Q9P258 522 aaKnown RBP6.53□□□□□ -1.36
LIMA1-213ENST00000552720 NDRG3Q9UGV2 375 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 AK3Q9UIJ7 227 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 ANXA10Q9UJ72 324 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 NXT1Q9UKK6 140 aaKnown RBP6.53□□□□□ -1.36
LIMA1-213ENST00000552720 AMDHD2Q9Y303 409 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 LOC400499M0QZD8 3231 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 A0A0G2JMM0 328 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 A0A1W2PPB8 328 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 A0A1W2PRS3 328 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 SERPINE3A8MV23 424 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 KIR3DP1A8MWS1 328 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 RNASEK-C17orf49H0YIS7 233 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 K7EPK0 472 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 TP53I11O14683 189 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 XRCC2O43543 280 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 UMODP07911 640 aa6.53□□□□□ -1.36
LIMA1-213ENST00000552720 SFTA3P0C7M3 94 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms